FvH4_5g19680

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017307
Physical Location & Seq
Reverse (-)
11515025 .. 11517407
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19680.t1

Sequence Viewer

Length: 897 bp
ATGCATTCCTTCATCTTCTTCATTCTCTTCTTTCCTTCCATCTTTCTTGAGACAGAAGCCTCCAGTGAAATCTGTGAAACAAAGAAGTGCGCTGTTGGAGCTCCTGAGATTCGGTTTCCTTTCCGAGTAAAAAGCCAGCAGCCCCAACACTGTGGTCACTGTGGTTTTGATCTTGACTGCAGCAACAACAGAACCACAATCCACATCCCATCTTATGGTGACTTGGTCGTGAAATCTATCTCCTACGATAGCAAGATACTTGAGCTTCTTGACCCCAAGAACTGTGTCCATGGAGTCTTTCTTAATCTTAATCTCTCCCTTACACCACTTCAATACTACTATGTCATGAAAGAGTACTCGTATCTCAATTGTTCAGTTAGGCTACCAAGATCTTTCACAGAAGTTCCCTGCTTGAGTGGCTCTAGCTACCATGTGTACACTGTTGAGCCTACTTTTGCTGTACCAAATTCTTGCAGGGTAGTGAAAACTGTTCCTATTCCTTTTGAGTATAGTCCCTATCTGGCTGATAATAGCTTCGGTCTGGGATTAACCTGGAACATACTTGGCCATGAAGATTCTCATGAAGCAAAAGTAGGCTCATTGCAGACTGAAACAGAACAAGAAACTGATTGCTTCACAATGGCACATGTTAAAGTGTGTGTTGCAATTCTTATTTTCGTGGCGGCAGCAGTTATTATAAGAGTAAACATGAATCAGTCCATAAAACGACATAATCAGAAACAAGTGGAAAATCAAATTCAGGTTGAGGAACTGCTGGGAGAGTACAAAGCCAACAAGACTGGAAGATATCATGAAGCTGATCTTAAGCAAAGCAACAGCCAGTGTGAAACAGTTATGGACATTAAAATCATGAAGACTCAGAAAGTGCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

299

Amino Acids

33.83

Weight (kDa)

6.26

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 90 1.2e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19680
malus_domestica MD06G1052700.v1.1
prunus_persica Prupe.5G063400_v2.0.a1
pyrus_communis pycom06g04410
rosa_laevigata RLG00000003465
rosa_multiflora Rmu_sc0002918.1_g000005
rosa_roxburghii Rroxscaffold_3G00253140
rosa_rugosa Rorug07G0083600
rosa_samantha Rh7AG213400 Rh7BG211300 Rh7CG226300 Rh7DG220600
rosa_wichuraiana Rw7G018490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AccB7I CCANNNNNTGG 1 cut(s) 215
AciI CCGC 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 2 cut(s) 466, 756
AfaI GTAC 4 cut(s) 356, 437, 462, 785
AfiI CCNNNNNNNGG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 646
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 5 cut(s) 101, 265, 426, 534, 818
AluI AGCT 5 cut(s) 101, 265, 426, 534, 818
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 3 cut(s) 139, 180, 686
ApoI RAATTY 2 cut(s) 466, 756
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 230
BalI TGGCCA 1 cut(s) 567
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 881
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 3 cut(s) 151, 192, 698
BccI CCATC 2 cut(s) 47, 217
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 824
BglII AGATCT 1 cut(s) 389
BisI GCNGC 4 cut(s) 140, 181, 684, 687
BlsI GCNGC 4 cut(s) 141, 182, 685, 688
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 553
BmrFI CCNGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 881
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 3 cut(s) 68, 281, 433
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 3 cut(s) 63, 805, 841
Bse3DI GCAATG 1 cut(s) 599
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 2 cut(s) 96, 893
BseNI ACTGG 3 cut(s) 63, 805, 841
BseXI GCAGC 3 cut(s) 151, 192, 698
BseYI CCCAGC 1 cut(s) 775
BshFI GGCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 3 cut(s) 169, 389, 820
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 683
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 2 cut(s) 97, 892
BspHI TCATGA 4 cut(s) 345, 580, 811, 870
BspMAI CTGCAG 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 3 cut(s) 63, 805, 841
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 3 cut(s) 169, 389, 820
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 6 cut(s) 152, 161, 284, 442, 490, 853
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 824
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 105, 879
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 172, 392, 823
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 169, 389, 820
BstMWI GCNNNNNNNGC 2 cut(s) 98, 417
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 151, 192, 698
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 5 cut(s) 70, 148, 157, 438, 848
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 4 cut(s) 345, 580, 811, 870
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 355, 436, 461, 784
CviAII CATG 9 cut(s) 290, 346, 431, 569, 581, 647, 709, 812, 871
CviQI GTAC 4 cut(s) 355, 436, 461, 784
DdeI CTNAG 2 cut(s) 105, 879
DpnI GATC 3 cut(s) 171, 391, 822
DpnII GATC 3 cut(s) 169, 389, 820
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 809
Eco53kI GAGCTC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 551
EcoRV GATATC 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 9 cut(s) 293, 349, 434, 572, 584, 650, 712, 815, 874
FalI AAGNNNNNCTT 2 cut(s) 807, 839
FaqI GGGAC 1 cut(s) 498
FatI CATG 9 cut(s) 289, 345, 430, 568, 580, 646, 708, 811, 870
Fnu4HI GCNGC 4 cut(s) 140, 181, 684, 687
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 140, 181, 684, 687
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 140, 181, 684, 687
GsaI CCCAGC 1 cut(s) 779
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 567
HhaI GCGC 1 cut(s) 92
Hin1II CATG 9 cut(s) 293, 349, 434, 572, 584, 650, 712, 815, 874
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 5 cut(s) 109, 294, 575, 712, 877
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 3 cut(s) 436, 438, 706
Hpy188I TCNGA 3 cut(s) 125, 738, 882
Hpy188III TCNNGA 9 cut(s) 47, 104, 173, 229, 269, 346, 581, 812, 871
Hpy8I GTNNAC 3 cut(s) 436, 438, 706
HpyAV CCTTC 2 cut(s) 19, 45
HpyCH4III ACNGT 6 cut(s) 152, 161, 284, 442, 490, 853
HpyCH4V TGCA 6 cut(s) 4, 180, 474, 604, 665, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 417
HpyF3I CTNAG 2 cut(s) 105, 879
Hsp92II CATG 9 cut(s) 293, 349, 434, 572, 584, 650, 712, 815, 874
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 3 cut(s) 169, 389, 820
LmnI GCTCC 2 cut(s) 98, 106
Lsp1109I GCAGC 3 cut(s) 151, 192, 698
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 155, 218
MalI GATC 3 cut(s) 171, 391, 822
MboI GATC 3 cut(s) 169, 389, 820
MboII GAAGA 6 cut(s) 7, 10, 19, 584, 816, 886
MfeI CAATTG 1 cut(s) 367
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 4 cut(s) 367, 466, 666, 756
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 2 cut(s) 303, 871
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 70, 760
Mox20I TGGCCA 1 cut(s) 567
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 567
MseI TTAA 6 cut(s) 303, 309, 548, 651, 825, 864
Msp20I TGGCCA 1 cut(s) 567
MspCI CTTAAG 1 cut(s) 824
MspR9I CCNGG 1 cut(s) 553
MunI CAATTG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 2 cut(s) 98, 417
NcoI CCATGG 1 cut(s) 289
NdeII GATC 3 cut(s) 169, 389, 820
NlaIII CATG 9 cut(s) 293, 349, 434, 572, 584, 650, 712, 815, 874
NmuCI GTSAC 2 cut(s) 155, 218
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 650
PagI TCATGA 4 cut(s) 345, 580, 811, 870
PciI ACATGT 1 cut(s) 646
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 109, 575, 712
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 4 cut(s) 141, 182, 685, 688
PleI GAGTC 2 cut(s) 302, 871
PpsI GAGTC 2 cut(s) 302, 871
PscI ACATGT 1 cut(s) 646
PsiI TTATAA 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 775
PspGI CCWGG 1 cut(s) 551
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 4 cut(s) 356, 437, 462, 785
RsaNI GTAC 4 cut(s) 355, 436, 461, 784
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 6 cut(s) 303, 309, 548, 651, 825, 864
SatI GCNGC 4 cut(s) 140, 181, 684, 687
Sau3AI GATC 3 cut(s) 169, 389, 820
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 303, 871
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 103
SetI ASST 7 cut(s) 103, 267, 428, 536, 554, 765, 820
SfcI CTRYAG 1 cut(s) 178
SmlI CTYRAG 4 cut(s) 47, 260, 412, 824
SmoI CTYRAG 4 cut(s) 47, 260, 412, 824
Sse9I AATT 4 cut(s) 367, 466, 666, 756
SsiI CCGC 1 cut(s) 683
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 6 cut(s) 152, 161, 284, 442, 490, 853
TaqII GACCGA 1 cut(s) 527
TasI AATT 4 cut(s) 367, 466, 666, 756
TatI WGTACW 3 cut(s) 354, 435, 783
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 3 cut(s) 109, 575, 712
Tru1I TTAA 6 cut(s) 303, 309, 548, 651, 825, 864
Tru9I TTAA 6 cut(s) 303, 309, 548, 651, 825, 864
TscAI CASTG 5 cut(s) 70, 155, 164, 445, 848
TseFI GTSAC 2 cut(s) 155, 218
TseI GCWGC 3 cut(s) 139, 180, 686
Tsp45I GTSAC 2 cut(s) 155, 218
TspDTI ATGAA 7 cut(s) 10, 362, 585, 597, 725, 828, 887
TspRI CASTG 5 cut(s) 70, 155, 164, 445, 848
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 215
Vha464I CTTAAG 1 cut(s) 824
XapI RAATTY 2 cut(s) 466, 756
XceI RCATGY 1 cut(s) 650
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.