pycom06g04410

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0017307
Physical Location & Seq
Forward (+)
5685908 .. 5688532
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04410.1

Sequence Viewer

Length: 921 bp
ATGCATGCCTTCATCTTCTTCATCCTTTTCTCCACTGCCATCTTAATTGAAACACAAGCATCCACTGAAAACTGCACAACTACTAAGTGCTCTCATGGCGAACCCGATATTCGGTTTCCTTTCCAAGTAAGAGGCCGGCGTCCCCATCACTGTGGTCTACCCGGTTTTGACATCGACTGCAGCAACAACGCTTCCAAAATTCACTTCCCATCTTATGGTGAACTGGGCATCAAATCCATCTCGTACGATGCCAGAAGACTCGATCTTCTCGATCCCAAGGGTTGCGTCCATGAAGTCTTTCTTAATCTCAATCTTTCCCTTACCCCGTTTCGATATTACTATGTTCTGAAAGAGTACTCGTATCTCAATTGTTCGGTTACGCTTTCACCTTCTTTCTCTCAAGTTCCCTGCCTAAGTGGCTCCGGCTTTCATGTTTACACTGTGGAGCCTTCCATGGCTGTGCCAAACTTTTGCAGGGTTGTGAAAACTGTTCCCATTCCTTTCGAGTACAGTCCTTATCTTTCTGACAGTAGCTTCGGTCTTGGGTTAACTTGGGGCTCAGTTGGGAATCAAGAAACAGGATGTTTCACCATGGCACATGTTAAAGTGGCGTGTATTGCCATTTTAATTTTGGTGCTGGCGGTGCTGGCAAGAATAAGCATGCATCGGTCCAACAAAACACAACGTCGGAGAGAAGGGGACGATCGAATTCAGGTTGAGAAACTACTCGGAGATTACAAAAGCCTTAAGCTTGAAAGGTGTGAAATAAGGCAACTCTACTCAGGAAGGAGCCAAGCCCCCGATAGACCGGCCCCTATCCCCTTAAAAACGCGAACCAAAAAAAACACAATTTTTTCTTCAACCAACAAGAAAAAGAAAACCCAATTTGTAGTGTATAAATACGATTCATCTGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

307

Amino Acids

34.58

Weight (kDa)

9.18

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 89 1.1e-12 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19680
malus_domestica MD06G1052700.v1.1
prunus_persica Prupe.5G063400_v2.0.a1
pyrus_communis pycom06g04410
rosa_laevigata RLG00000003465
rosa_multiflora Rmu_sc0002918.1_g000005
rosa_roxburghii Rroxscaffold_3G00253140
rosa_rugosa Rorug07G0083600
rosa_samantha Rh7AG213400 Rh7BG211300 Rh7CG226300 Rh7DG220600
rosa_wichuraiana Rw7G018490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 832
AciI CCGC 1 cut(s) 641
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 198, 708
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 3 cut(s) 245, 356, 509
AfiI CCNNNNNNNGG 2 cut(s) 111, 215
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 50, 755, 861
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 534, 751
AluI AGCT 2 cut(s) 534, 751
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 133, 810
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 2 cut(s) 198, 708
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 669, 811
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 230, 378, 580
AvaII GGWCC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 192
BccI CCATC 4 cut(s) 47, 153, 217, 245
BcnI CCSGG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 746
BglI GCCNNNNNGGC 1 cut(s) 417
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 2 cut(s) 669, 811
BmiI GGNNCC 4 cut(s) 421, 447, 791, 813
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 4 cut(s) 68, 237, 238, 673
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 276, 453, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 215
Bse118I RCCGGY 2 cut(s) 135, 808
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 276, 453, 591
BseGI GGATG 3 cut(s) 21, 59, 587
BseLI CCNNNNNNNGG 2 cut(s) 111, 215
BseMII CTCAG 2 cut(s) 573, 795
BseNI ACTGG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 832
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 135, 812
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 4 cut(s) 136, 162, 423, 809
BsiWI CGTACG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 126, 713
BslI CCNNNNNNNGG 2 cut(s) 111, 215
BsmFI GGGAC 2 cut(s) 126, 713
BsnI GGCC 2 cut(s) 135, 812
Bsp1286I GDGCHC 2 cut(s) 92, 560
Bsp143I GATC 3 cut(s) 262, 271, 703
Bsp19I CCATGG 2 cut(s) 453, 591
BspACI CCGC 1 cut(s) 641
BspANI GGCC 2 cut(s) 135, 812
BspCNI CTCAG 2 cut(s) 572, 794
BspFNI CGCG 1 cut(s) 832
BspLI GGNNCC 4 cut(s) 421, 447, 791, 813
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 746
BsrFI RCCGGY 2 cut(s) 135, 808
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 2 cut(s) 135, 808
BssECI CCNNGG 3 cut(s) 276, 453, 591
BssMI GATC 3 cut(s) 262, 271, 703
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 3 cut(s) 276, 453, 591
Bst4CI ACNGT 5 cut(s) 152, 442, 490, 512, 530
BstACI GRCGYC 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 746
BstC8I GCNNGC 5 cut(s) 6, 137, 639, 648, 662
BstDEI CTNAG 4 cut(s) 84, 413, 559, 781
BstDSI CCRYGG 2 cut(s) 453, 591
BstF5I GGATG 3 cut(s) 21, 59, 587
BstFNI CGCG 1 cut(s) 832
BstKTI GATC 3 cut(s) 265, 274, 706
BstMBI GATC 3 cut(s) 262, 271, 703
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 5 cut(s) 96, 417, 617, 643, 647
BstNSI RCATGY 3 cut(s) 8, 602, 664
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 1 cut(s) 832
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuRI GGCC 2 cut(s) 135, 812
BtgI CCRYGG 2 cut(s) 453, 591
BtsCI GGATG 3 cut(s) 21, 59, 587
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 63, 148, 438
Cac8I GCNNGC 5 cut(s) 6, 137, 639, 648, 662
Cfr10I RCCGGY 2 cut(s) 135, 808
Cfr13I GGNCC 2 cut(s) 669, 811
CseI GACGC 2 cut(s) 128, 274
Csp6I GTAC 3 cut(s) 244, 355, 508
CviAII CATG 8 cut(s) 5, 95, 290, 431, 454, 592, 599, 661
CviQI GTAC 3 cut(s) 244, 355, 508
DdeI CTNAG 4 cut(s) 84, 413, 559, 781
DpnI GATC 3 cut(s) 264, 273, 705
DpnII GATC 3 cut(s) 262, 271, 703
Eco130I CCWWGG 3 cut(s) 276, 453, 591
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 276, 453, 591
EcoT22I ATGCAT 2 cut(s) 6, 666
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 3 cut(s) 276, 453, 591
FaeI CATG 8 cut(s) 8, 98, 293, 434, 457, 595, 602, 664
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 126, 713
FatI CATG 8 cut(s) 4, 94, 289, 430, 453, 591, 598, 660
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 3 cut(s) 8, 46, 594
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 135, 812
HapII CCGG 4 cut(s) 136, 162, 423, 809
HgaI GACGC 2 cut(s) 128, 274
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 8 cut(s) 8, 98, 293, 434, 457, 595, 602, 664
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 3 cut(s) 258, 568, 905
HpaI GTTAAC 1 cut(s) 549
HpaII CCGG 4 cut(s) 136, 162, 423, 809
HphI GGTGA 3 cut(s) 230, 378, 580
Hpy166II GTNNAC 4 cut(s) 158, 221, 436, 549
Hpy188I TCNGA 5 cut(s) 348, 526, 690, 731, 913
Hpy188III TCNNGA 3 cut(s) 269, 572, 783
Hpy8I GTNNAC 4 cut(s) 158, 221, 436, 549
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 5 cut(s) 19, 399, 459, 689, 780
HpyCH4III ACNGT 5 cut(s) 152, 442, 490, 512, 530
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 5 cut(s) 4, 75, 180, 474, 664
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 417, 617, 643, 647
HpyF3I CTNAG 4 cut(s) 84, 413, 559, 781
HpySE526I ACGT 1 cut(s) 685
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 8 cut(s) 8, 98, 293, 434, 457, 595, 602, 664
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
KspAI GTTAAC 1 cut(s) 549
Kzo9I GATC 3 cut(s) 262, 271, 703
LmnI GCTCC 3 cut(s) 425, 445, 789
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 4 cut(s) 68, 237, 238, 673
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 376
MalI GATC 3 cut(s) 264, 273, 705
MboI GATC 3 cut(s) 262, 271, 703
MboII GAAGA 5 cut(s) 7, 10, 257, 267, 849
MfeI CAATTG 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 92, 560
MluCI AATT 8 cut(s) 45, 198, 367, 627, 708, 849, 884, 916
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 668, 696
MnlI CCTC 1 cut(s) 125
Mph1103I ATGCAT 2 cut(s) 6, 666
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 7 cut(s) 44, 303, 548, 603, 626, 747, 824
MslI CAYNNNNRTG 2 cut(s) 150, 458
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 4 cut(s) 136, 162, 423, 809
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 367
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 5 cut(s) 96, 417, 617, 643, 647
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 2 cut(s) 453, 591
NdeII GATC 3 cut(s) 262, 271, 703
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 8 cut(s) 8, 98, 293, 434, 457, 595, 602, 664
NlaIV GGNNCC 4 cut(s) 421, 447, 791, 813
NsiI ATGCAT 2 cut(s) 6, 666
NspI RCATGY 3 cut(s) 8, 602, 664
PaeI GCATGC 2 cut(s) 8, 664
PciI ACATGT 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 568, 905
Pfl23II CGTACG 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 1 cut(s) 182
Ple19I CGATCG 1 cut(s) 706
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PscI ACATGT 1 cut(s) 598
PspLI CGTACG 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 421, 447, 791, 813
PspPI GGNCC 2 cut(s) 669, 811
PstI CTGCAG 1 cut(s) 182
PvuI CGATCG 1 cut(s) 706
RsaI GTAC 3 cut(s) 245, 356, 509
RsaNI GTAC 3 cut(s) 244, 355, 508
RseI CAYNNNNRTG 2 cut(s) 150, 458
SaqAI TTAA 7 cut(s) 44, 303, 548, 603, 626, 747, 824
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 3 cut(s) 262, 271, 703
Sau96I GGNCC 2 cut(s) 669, 811
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 92, 560
SetI ASST 6 cut(s) 391, 536, 688, 717, 753, 761
SfaNI GCATC 4 cut(s) 68, 237, 238, 673
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 669
SmiMI CAYNNNNRTG 2 cut(s) 150, 458
SmlI CTYRAG 2 cut(s) 399, 746
SmoI CTYRAG 2 cut(s) 399, 746
SphI GCATGC 2 cut(s) 8, 664
Sse9I AATT 8 cut(s) 45, 198, 367, 627, 708, 849, 884, 916
SsiI CCGC 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 3 cut(s) 276, 453, 591
TaaI ACNGT 5 cut(s) 152, 442, 490, 512, 530
TaiI ACGT 1 cut(s) 688
TaqI TCGA 6 cut(s) 174, 261, 270, 331, 504, 706
TaqII GACCGA 2 cut(s) 527, 657
TasI AATT 8 cut(s) 45, 198, 367, 627, 708, 849, 884, 916
TatI WGTACW 2 cut(s) 354, 507
TfiI GAWTC 2 cut(s) 568, 905
Tru1I TTAA 7 cut(s) 44, 303, 548, 603, 626, 747, 824
Tru9I TTAA 7 cut(s) 44, 303, 548, 603, 626, 747, 824
TscAI CASTG 4 cut(s) 40, 70, 155, 445
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 4 cut(s) 10, 306, 419, 897
TspRI CASTG 4 cut(s) 40, 70, 155, 445
Van91I CCANNNNNTGG 1 cut(s) 215
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 669
XapI RAATTY 2 cut(s) 198, 708
XceI RCATGY 3 cut(s) 8, 602, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 2 cut(s) 6, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.