Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017307

Physical Location & Seq

Genomic Coordinates Forward (+)

7730913 .. 7733071

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCATGCCTTCACCTTCTTCATCCTCTTCTTCACTTCCATCTTTCTTGAAACACAAGCAAGCGATAAAAACTGCGCAACTATGTGCACTCATGGGACTCCCCATATTCAGTTTCCTTTCCATGTAAGAGGGCAGCCCGAACACGGCGGTGACCCTATTTATGAGCTTGACTGCAACAACGCCACCAAAACTACCACAATCCACTTCCCGTCTTACGGCGACTTGGTCGTCAAATCCATCTCTTATGACATGAAAAGGCTTGATCTTCTCGACCCCAAGAGTTGTGTCCATGAAGTCTTTCTTAACCTCAATCTCTCCCTCACCCCATTTCAATACTACTATGTTGTGAAGGAGCACTCATATCTCAACTGTTCAGTTAGGCTTTCGCCTTCTTTCTCCGAAATCCCCTGTTTAAGTGGCTCCGACTATCATGTTTACACCGTTCCCCCTTCTTTGGCTGTCCCAAATTCTTGCAGGGTTGTGAAAACAGTTCCTATTCCTTTCGGGTATAGTCCTTATCTATCTGACAATAGTTTTGGTCTTGGATTAACTTGGGGCTCAGTTGGGGATAGACAACAAGAAACAGAATGCTTCACCATGGCACATGTGAAAGTGGTATGTATTGCCATCTTCATTTTCGCTGCTGCGGCACTGAGAAAATTAAAAATTTATCAGTCCAAAAAGCTACAACATTTGATTGAAGGGAAGGATCAAGTTCAGGTTGAGAAGTTATTGGGAGATTATAAACCCCTTAAACTTGAAACATGCTGCAATTCCGATCTCAAGCAAGGAAACAGTCAGGGTGAAACAGTTTTGGACATTAGAATCATGAAGCAACACAAAATGCAAGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

286

Amino Acids

32.18

Weight (kDa)

7.15

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19680
malus_domestica	MD06G1052700.v1.1
prunus_persica	Prupe.5G063400_v2.0.a1
pyrus_communis	pycom06g04410
rosa_laevigata	RLG00000003465
rosa_multiflora	Rmu_sc0002918.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253140
rosa_rugosa	Rorug07G0083600
rosa_samantha	Rh7AG213400 Rh7BG211300 Rh7CG226300 Rh7DG220600
rosa_wichuraiana	Rw7G018490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	76
AciI	CCGC	2 cut(s)	147, 647
AclWI	GGATC	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	466, 666
AfiI	CCNNNNNNNGG	3 cut(s)	143, 215, 454
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	50, 332, 701, 761
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	166, 685, 851
AluI	AGCT	3 cut(s)	166, 685, 851
Alw21I	GWGCWC	2 cut(s)	89, 357
Alw44I	GTGCAC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	717
ApaLI	GTGCAC	1 cut(s)	85
ApeKI	GCWGC	4 cut(s)	133, 641, 644, 768
ApoI	RAATTY	2 cut(s)	466, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	5 cut(s)	4, 161, 313, 586, 815
BaeGI	GKGCMC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	560
Bbv12I	GWGCWC	2 cut(s)	89, 357
BbvI	GCAGC	4 cut(s)	145, 628, 631, 755
BccI	CCATC	3 cut(s)	47, 245, 635
BceAI	ACGGC	2 cut(s)	160, 232
BisI	GCNGC	5 cut(s)	134, 642, 645, 648, 769
BlsI	GCNGC	5 cut(s)	135, 643, 646, 649, 770
BmiI	GGNNCC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	767
BsaJI	CCNNGG	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 215, 454
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	143, 215, 454
BseMII	CTCAG	2 cut(s)	573, 644
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	4 cut(s)	145, 628, 631, 755
BsiHKAI	GWGCWC	2 cut(s)	89, 357
BslFI	GGGAC	2 cut(s)	109, 446
BslI	CCNNNNNNNGG	3 cut(s)	143, 215, 454
BsmFI	GGGAC	2 cut(s)	109, 446
BsmI	GAATGC	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	89, 357, 560
Bsp143I	GATC	3 cut(s)	262, 709, 778
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	147, 647
BspCNI	CTCAG	2 cut(s)	572, 645
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	717
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	262, 709, 778
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	5 cut(s)	371, 442, 490, 797, 811
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	6, 61, 849
BstDEI	CTNAG	2 cut(s)	559, 653
BstDSI	CCRYGG	1 cut(s)	597
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	265, 712, 781
BstMBI	GATC	3 cut(s)	262, 709, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNSI	RCATGY	3 cut(s)	8, 608, 768
BstPI	GGTNACC	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	145, 628, 631, 755
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	650
Cac8I	GCNNGC	3 cut(s)	6, 61, 849
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	1 cut(s)	77
CviJI	RGCY	9 cut(s)	136, 166, 259, 382, 420, 458, 558, 685, 851
CviKI_1	RGCY	9 cut(s)	136, 166, 259, 382, 420, 458, 558, 685, 851
DdeI	CTNAG	2 cut(s)	559, 653
DpnI	GATC	3 cut(s)	264, 711, 780
DpnII	GATC	3 cut(s)	262, 709, 778
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	597
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	109, 446
Fnu4HI	GCNGC	5 cut(s)	134, 642, 645, 648, 769
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	134, 642, 645, 648, 769
FspI	TGCGCA	1 cut(s)	76
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	5 cut(s)	134, 642, 645, 648, 769
HhaI	GCGC	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	97, 825
HphI	GGTGA	5 cut(s)	4, 161, 313, 586, 815
Hpy166II	GTNNAC	2 cut(s)	87, 436
Hpy188I	TCNGA	4 cut(s)	400, 424, 526, 778
Hpy188III	TCNNGA	3 cut(s)	47, 269, 829
Hpy8I	GTNNAC	2 cut(s)	87, 436
HpyAV	CCTTC	7 cut(s)	19, 25, 343, 399, 459, 695, 700
HpyCH4III	ACNGT	5 cut(s)	371, 442, 490, 797, 811
HpyCH4V	TGCA	6 cut(s)	4, 87, 174, 474, 771, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	2 cut(s)	559, 653
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	262, 709, 778
LmnI	GCTCC	2 cut(s)	352, 425
LpnPI	CCDG	4 cut(s)	421, 460, 704, 785
Lsp1109I	GCAGC	4 cut(s)	145, 628, 631, 755
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	264, 711, 780
MboI	GATC	3 cut(s)	262, 709, 778
MboII	GAAGA	5 cut(s)	10, 19, 22, 257, 622
MhlI	GDGCHC	3 cut(s)	89, 357, 560
MluCI	AATT	4 cut(s)	466, 659, 666, 772
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	4 cut(s)	35, 122, 317, 329
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	5 cut(s)	303, 413, 548, 662, 753
MslI	CAYNNNNRTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	262, 709, 778
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	8, 608, 768
OliI	CACNNNNGTG	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	828
PciI	ACATGT	1 cut(s)	604
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	825
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	135, 643, 646, 649, 770
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	1 cut(s)	604
PsiI	TTATAA	1 cut(s)	744
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	303, 413, 548, 662, 753
SatI	GCNGC	5 cut(s)	134, 642, 645, 648, 769
Sau3AI	GATC	3 cut(s)	262, 709, 778
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	89, 357, 560
SetI	ASST	6 cut(s)	17, 168, 309, 687, 723, 853
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	466, 659, 666, 772
SsiI	CCGC	2 cut(s)	147, 647
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	5 cut(s)	371, 442, 490, 797, 811
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	466, 659, 666, 772
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	1 cut(s)	825
Tru1I	TTAA	5 cut(s)	303, 413, 548, 662, 753
Tru9I	TTAA	5 cut(s)	303, 413, 548, 662, 753
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	4 cut(s)	133, 641, 644, 768
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	5 cut(s)	10, 266, 306, 622, 845
TspRI	CASTG	1 cut(s)	657
Tth111I	GACNNNGTC	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	466, 666
XceI	RCATGY	3 cut(s)	8, 608, 768
XmnI	GAANNNNTTC	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.