Rroxscaffold_3G00253140

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017307
Physical Location & Seq
Forward (+)
47190537 .. 47192529
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253140.1

Sequence Viewer

Length: 897 bp
ATGCATGCCTTCATCTTCTTCCTCCTCTTCTTTACTTCCATCTTTCTTGAAACAGAAGCCTCCGGTGAAATCTGCAAAACAAAGAAATGTGCTGTTGAGGCTCCCAAAATTCGGTTTCCTTTCCAATTAAAAAGCCAGCAGCCCCAACACTGTGGTCTCCCTGGTTTTGATCTTGATTGCAGCAACAACAGAACCACGATCCACATCCCGTCATATGGTGACTTGGTTGTGAAATCTATCTCCTACGATATCAAGAAACTTGAGCTCCTTGACCCCAAGAATTGTGTTCATGGAGTCTTTCTTAATCTCAATATCTCCCTTACACCATTTCAATACTACTATGTCATGAAAGAGTACTCGTATCTCAATTGTTCAGTTAGGCTGTCAAAATGTTTCAGAGAAGTTCCCTGCTTGAGTGGCTCTGGCTACCATGTTTACACTGTTAAGCCTACTTTCGCTGTACCAAATTCTTGCAGGGTGGTGAAAACTGTACCTATTCCTTTTGAGTATAGTCCCTATCTGGCTGACAATAGCTTCGGTCTGGGATTAACCTGGAACTTACTTGGGCATGAAGATTCTCATGAAGCAAAAGTAGGGTCATTGCAGACTCGAACAGAACAACAAACTGATTGCTTCACTATCGCACATGTTAAAGTGTGTATTGCAATTCTTATTTTCGTGGCGGCAGCAGTTATTATAAGAGTAAACATGAATCAATCCAGAAAACTACATTATCAGAAACAAGGGGAAAATCAAATTCAGGTTGAGAAACTACTGGGAGAGTACAGAGCCAATAAGACCGGAACATATCATGAAGCTGATCTCAAGCAAAGCAACAGTCAGTGTGAAACAGTTATGGACATTAAAATCATGAAGAACCAGAAAGTGCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

298

Amino Acids

33.9

Weight (kDa)

8.62

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 89 1.5e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19680
malus_domestica MD06G1052700.v1.1
prunus_persica Prupe.5G063400_v2.0.a1
pyrus_communis pycom06g04410
rosa_laevigata RLG00000003465
rosa_multiflora Rmu_sc0002918.1_g000005
rosa_roxburghii Rroxscaffold_3G00253140
rosa_rugosa Rorug07G0083600
rosa_samantha Rh7AG213400 Rh7BG211300 Rh7CG226300 Rh7DG220600
rosa_wichuraiana Rw7G018490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AciI CCGC 1 cut(s) 683
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 3 cut(s) 108, 466, 756
AfaI GTAC 4 cut(s) 356, 462, 492, 785
AfiI CCNNNNNNNGG 2 cut(s) 111, 215
AflIII ACRYGT 1 cut(s) 646
AgsI TTSAA 2 cut(s) 50, 332
AjnI CCWGG 2 cut(s) 160, 551
AluBI AGCT 3 cut(s) 265, 534, 818
AluI AGCT 3 cut(s) 265, 534, 818
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 139, 180, 686
ApoI RAATTY 3 cut(s) 108, 466, 756
ArsI GACNNNNNNTTYG 6 cut(s) 518, 550, 581, 613, 823, 855
AsuHPI GGTGA 3 cut(s) 77, 230, 493
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 151, 192, 698
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 162, 553
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 4 cut(s) 140, 181, 684, 687
BlsI GCNGC 4 cut(s) 141, 182, 685, 688
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 162, 553
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 162, 553
BmrI ACTGGG 1 cut(s) 785
BmuI ACTGGG 1 cut(s) 785
BpuEI CTTGAG 3 cut(s) 281, 433, 809
BsaBI GATNNNNATC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 2 cut(s) 62, 800
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 215
Bse1I ACTGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 599
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 162, 553
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 111, 215
BseMI GCAATG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 151, 192, 698
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 2 cut(s) 63, 801
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 111, 215
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 169, 198, 820
BspACI CCGC 1 cut(s) 683
BspHI TCATGA 4 cut(s) 345, 580, 811, 870
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 599
BsrI ACTGG 1 cut(s) 780
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 169, 198, 820
Bst2UI CCWGG 2 cut(s) 162, 553
Bst4CI ACNGT 5 cut(s) 152, 442, 490, 839, 853
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 6, 137
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 3 cut(s) 172, 201, 823
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 169, 198, 820
BstMWI GCNNNNNNNGC 2 cut(s) 98, 417
BstNI CCWGG 2 cut(s) 162, 553
BstNSI RCATGY 2 cut(s) 8, 650
BstSCI CCNGG 2 cut(s) 160, 551
BstV1I GCAGC 3 cut(s) 151, 192, 698
BstXI CCANNNNNNTGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 148, 438, 848
Cac8I GCNNGC 2 cut(s) 6, 137
CciI TCATGA 4 cut(s) 345, 580, 811, 870
Csp6I GTAC 4 cut(s) 355, 461, 491, 784
CviQI GTAC 4 cut(s) 355, 461, 491, 784
DpnI GATC 3 cut(s) 171, 200, 822
DpnII GATC 3 cut(s) 169, 198, 820
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 160, 551
EcoRV GATATC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 267
FaqI GGGAC 1 cut(s) 498
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 140, 181, 684, 687
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 140, 181, 684, 687
GluI GCNGC 4 cut(s) 140, 181, 684, 687
HapII CCGG 2 cut(s) 63, 801
HinfI GANTC 4 cut(s) 294, 575, 607, 712
HpaII CCGG 2 cut(s) 63, 801
HphI GGTGA 3 cut(s) 77, 230, 493
Hpy166II GTNNAC 2 cut(s) 436, 706
Hpy188I TCNGA 2 cut(s) 398, 738
Hpy188III TCNNGA 8 cut(s) 47, 173, 253, 346, 581, 720, 812, 871
Hpy8I GTNNAC 2 cut(s) 436, 706
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 5 cut(s) 152, 442, 490, 839, 853
HpyCH4V TGCA 7 cut(s) 4, 75, 180, 474, 604, 665, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 417
Kzo9I GATC 3 cut(s) 169, 198, 820
LmnI GCTCC 2 cut(s) 106, 270
Lsp1109I GCAGC 3 cut(s) 151, 192, 698
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 171, 200, 822
MboI GATC 3 cut(s) 169, 198, 820
MboII GAAGA 5 cut(s) 7, 10, 19, 584, 886
MfeI CAATTG 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 7 cut(s) 108, 125, 280, 367, 466, 666, 756
MlyI GAGTC 2 cut(s) 303, 601
MnlI CCTC 4 cut(s) 32, 35, 70, 91
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 128, 303, 444, 548, 651, 864
MspI CCGG 2 cut(s) 63, 801
MspR9I CCNGG 2 cut(s) 162, 553
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 2 cut(s) 162, 553
MwoI GCNNNNNNNGC 2 cut(s) 98, 417
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 169, 198, 820
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 650
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 4 cut(s) 345, 580, 811, 870
PciI ACATGT 1 cut(s) 646
PfeI GAWTC 2 cut(s) 575, 712
PkrI GCNGC 4 cut(s) 141, 182, 685, 688
PleI GAGTC 2 cut(s) 302, 601
PpsI GAGTC 2 cut(s) 302, 601
PscI ACATGT 1 cut(s) 646
PsiI TTATAA 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 160, 551
PspGI CCWGG 2 cut(s) 160, 551
PspN4I GGNNCC 1 cut(s) 102
RsaI GTAC 4 cut(s) 356, 462, 492, 785
RsaNI GTAC 4 cut(s) 355, 461, 491, 784
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 6 cut(s) 128, 303, 444, 548, 651, 864
SatI GCNGC 4 cut(s) 140, 181, 684, 687
Sau3AI GATC 3 cut(s) 169, 198, 820
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 303, 601
ScrFI CCNGG 2 cut(s) 162, 553
SduI GDGCHC 1 cut(s) 267
SetI ASST 6 cut(s) 267, 496, 536, 554, 765, 820
SmlI CTYRAG 3 cut(s) 260, 412, 824
SmoI CTYRAG 3 cut(s) 260, 412, 824
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 108, 125, 280, 367, 466, 666, 756
SsiI CCGC 1 cut(s) 683
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 160, 551
TaaI ACNGT 5 cut(s) 152, 442, 490, 839, 853
TaqI TCGA 1 cut(s) 610
TaqII GACCGA 1 cut(s) 527
TasI AATT 7 cut(s) 108, 125, 280, 367, 466, 666, 756
TatI WGTACW 2 cut(s) 354, 783
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 2 cut(s) 575, 712
Tru1I TTAA 6 cut(s) 128, 303, 444, 548, 651, 864
Tru9I TTAA 6 cut(s) 128, 303, 444, 548, 651, 864
TscAI CASTG 3 cut(s) 155, 445, 848
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 3 cut(s) 139, 180, 686
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 7 cut(s) 278, 362, 585, 597, 725, 828, 887
TspRI CASTG 3 cut(s) 155, 445, 848
XapI RAATTY 3 cut(s) 108, 466, 756
XceI RCATGY 2 cut(s) 8, 650
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.