FvH4_5g20922

cytochrome c oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019710
Physical Location & Seq
Reverse (-)
12576671 .. 12577777
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20922.t1

Sequence Viewer

Length: 258 bp
ATGTACGTGAATAAGGTGGCTCGGGGAGAGCAAGCTCCTAGGCCTCCTCATGAGTATGGCTCCATCAGATCAGCCCCTCCTAAACCGACTTTGACTCCGCCGCCGCCGCGGTCGTCGCCACCACCTAGCTACAAGGAGGAGGTTGAAGATGAAAATAACCCAGTTCGCGGCACTGCTATGCTAGTTACTGGCAGTTCTACAAGTGAGAAATTCCTCACCCTTTTCTTTGTGGTGGACCACCCTGTAGATGATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX6B

Protein Analysis

86

Amino Acids

9.4

Weight (kDa)

6.07

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20922
prunus_persica Prupe.5G049000_v2.0.a1
rosa_rugosa Rorug07G0100700.1
rosa_samantha Rh7AG235600 Rh7BG229900 Rh7CG249500 Rh7DG240300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 109, 168
AciI CCGC 6 cut(s) 98, 101, 104, 107, 109, 168
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 35, 129
AluI AGCT 2 cut(s) 35, 129
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 209
AspA2I CCTAGG 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 38
BccI CCATC 1 cut(s) 71
BfaI CTAG 3 cut(s) 39, 126, 182
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 4 cut(s) 101, 104, 107, 169
BlnI CCTAGG 1 cut(s) 38
BlsI GCNGC 4 cut(s) 102, 105, 108, 170
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BsaAI YACGTR 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 38, 107
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 161, 193
BseDI CCNNGG 2 cut(s) 38, 107
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 161, 193
BseRI GAGGAG 2 cut(s) 36, 152
Bsh1236I CGCG 2 cut(s) 109, 168
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 21
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 6 cut(s) 98, 101, 104, 107, 109, 168
BspANI GGCC 1 cut(s) 43
BspFNI CGCG 2 cut(s) 109, 168
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 161, 193
BssECI CCNNGG 2 cut(s) 38, 107
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 109, 168
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 106, 115
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 2 cut(s) 109, 168
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 50
CviJI RGCY 6 cut(s) 20, 35, 43, 60, 74, 129
CviKI_1 RGCY 6 cut(s) 20, 35, 43, 60, 74, 129
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 53
FaiI YATR 3 cut(s) 51, 57, 179
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 101, 104, 107, 169
Fsp4HI GCNGC 4 cut(s) 101, 104, 107, 169
FspBI CTAG 3 cut(s) 39, 126, 182
GluI GCNGC 4 cut(s) 101, 104, 107, 169
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 115
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 53
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 40, 65
LpnPI CCDG 2 cut(s) 174, 174
MaeI CTAG 3 cut(s) 39, 126, 182
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 158
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 6 cut(s) 54, 57, 87, 130, 133, 224
MslI CAYNNNNRTG 2 cut(s) 54, 176
MspA1I CMGCKG 1 cut(s) 109
MvnI CGCG 2 cut(s) 109, 168
MwoI GCNNNNNNNGC 2 cut(s) 106, 115
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 61
PagI TCATGA 1 cut(s) 49
PceI AGGCCT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 102, 105, 108, 170
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 235
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 54, 176
SacII CCGCGG 1 cut(s) 110
SatI GCNGC 4 cut(s) 101, 104, 107, 169
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 88
SetI ASST 7 cut(s) 9, 18, 37, 127, 131, 144, 257
SfcI CTRYAG 1 cut(s) 243
Sfr303I CCGCGG 1 cut(s) 110
SgrBI CCGCGG 1 cut(s) 110
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 54, 176
Sse9I AATT 1 cut(s) 209
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 6 cut(s) 98, 101, 104, 107, 109, 168
SspMI CTAG 3 cut(s) 39, 126, 182
StuI AGGCCT 1 cut(s) 43
StyI CCWWGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 9
TasI AATT 1 cut(s) 209
TauI GCSGC 4 cut(s) 103, 106, 109, 171
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 38
XspI CTAG 3 cut(s) 39, 126, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.