Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0019710

Physical Location & Seq

Genomic Coordinates Forward (+)

5187878 .. 5189596

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGGCCGCTTCCCAAGTAGATCCACATAACGAGATGAGAGCCAGAGATGTGAACAAGGTGGCAAGAGGAGAGCAAGCTCCTAGGCCTGCTCATGAATACGGCTCCATCAATTCAGCCCCTCCTAAACCCAAACCTAAGGACCCTGCTGCAGCCGAAATCAAGGTTGAAGATAACCCACCTGCGAGGCATTGCTATGCAAGTTACGTACAGTACTACAAGTGTATCAAGGAGGAAGACAAGGTACCTAAATGCGAGAGGTTTGAAAAGAATTACAGGTTGTTATGTCCTGTTGAATGGATTGAGAGGTGGGATGAAGAGCAAAAGCTTGGAGTGTTTGCTGGCCCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004129 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0005758 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008324 GO:0008535 GO:0009055 GO:0009987 GO:0015002 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016491 GO:0016675 GO:0016676 GO:0017004 GO:0019866 GO:0022607 GO:0022857 GO:0022890 GO:0022900 GO:0030061 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033108 GO:0033617 GO:0034220 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0051179 GO:0051234 GO:0055085 GO:0055114 GO:0065003 GO:0070013 GO:0070069 GO:0070469 GO:0071840 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04380 ko04714 ko04932 ko04933 ko05010 ko05012 ko05016 ko05418 map00190 map01100 map04260 map04380 map04714 map04932 map04933 map05010 map05012 map05016 map05418

Pfam Domains

Protein Families

COX6B

Protein Analysis

118

Amino Acids

13.41

Weight (kDa)

6.83

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20922
prunus_persica	Prupe.5G049000_v2.0.a1
rosa_rugosa	Rorug07G0100700.1
rosa_samantha	Rh7AG235600 Rh7BG229900 Rh7CG249500 Rh7DG240300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	3 cut(s)	210, 215, 246
AgsI	TTSAA	3 cut(s)	170, 266, 296
AluBI	AGCT	2 cut(s)	80, 328
AluI	AGCT	2 cut(s)	80, 328
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	6, 86, 343
ApeKI	GCWGC	2 cut(s)	149, 152
Asp718I	GGTACC	1 cut(s)	244
AspA2I	CCTAGG	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	142, 344
AvaII	GGWCC	1 cut(s)	142
AvrII	CCTAGG	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	138
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BanI	GGYRCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	136, 164
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	3 cut(s)	9, 150, 153
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	10, 151, 154
BmcAI	AGTACT	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 344
BmiI	GGNNCC	3 cut(s)	106, 144, 246
BpiI	GAAGAC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	84
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	136, 164
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	8, 88, 345
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	9
BsnI	GGCC	3 cut(s)	8, 88, 345
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	8, 88, 345
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	106, 144, 246
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	78, 90, 343
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	150
BstSNI	TACGTA	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	136, 164
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	8, 88, 345
BtsCI	GGATG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	78, 90, 343
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	142, 344
Csp6I	GTAC	3 cut(s)	209, 214, 245
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	9 cut(s)	8, 44, 80, 88, 105, 119, 155, 328, 345
CviKI_1	RGCY	9 cut(s)	8, 44, 80, 88, 105, 119, 155, 328, 345
CviQI	GTAC	3 cut(s)	209, 214, 245
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EclXI	CGGCCG	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	30, 96, 198, 286
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	9, 150, 153
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	9, 150, 153
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	9, 150, 153
HaeIII	GGCC	3 cut(s)	8, 88, 345
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	152, 200
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	85, 110
LpnPI	CCDG	7 cut(s)	58, 102, 159, 195, 262, 303, 327
Lsp1109I	GCAGC	2 cut(s)	136, 164
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	182, 248, 329
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	3 cut(s)	112, 271, 348
MnlI	CCTC	6 cut(s)	62, 132, 180, 226, 252, 300
MslI	CAYNNNNRTG	1 cut(s)	195
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	106, 144, 246
PagI	TCATGA	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	10, 151, 154
Ppu21I	YACGTR	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	106, 144, 246
PspPI	GGNCC	2 cut(s)	142, 344
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	3 cut(s)	210, 215, 246
RsaNI	GTAC	3 cut(s)	209, 214, 245
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	312
SatI	GCNGC	3 cut(s)	9, 150, 153
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	2 cut(s)	142, 344
ScaI	AGTACT	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	195
SnaBI	TACGTA	1 cut(s)	208
Sse9I	AATT	3 cut(s)	112, 271, 348
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	210
TasI	AATT	3 cut(s)	112, 271, 348
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	149, 152
TspDTI	ATGAA	2 cut(s)	111, 330
VpaK11BI	GGWCC	1 cut(s)	142
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.