Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019710

Physical Location & Seq

Genomic Coordinates Reverse (-)

23519743 .. 23520120

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTTACATTTGTTACTCCACCACTTAGGGAAGTAAGAAAAGAAAATAAGGCACGCATATTATGTTTGCACTTGCAAATTTCGGAGTATAGAACACACACCATAGAAAGAACAGATAGTGATCGAAATCGATCGAATTCAACTATGTCGGCTACGCAAGTGGATCCGCATGACAAGATGAGAAGCAGAGATGTGAATAAGGTGGCTCGGGGAGAGCAGGCTCCTCGGCCTGCTCATGAGTACGGCTCCATCAGATCAACTCCTCCTAAACCGACACCGACTCCTCCGCCGCGGCCTTCTTCGCCACCACCGAGCTACAAGGAGGAGGTTGAAGATGTACATAACCCAGTTGTGCGGCACTGCTATGCTAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004129 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0005758 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008324 GO:0008535 GO:0009055 GO:0009987 GO:0015002 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016491 GO:0016675 GO:0016676 GO:0017004 GO:0019866 GO:0022607 GO:0022857 GO:0022890 GO:0022900 GO:0030061 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033108 GO:0033617 GO:0034220 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0051179 GO:0051234 GO:0055085 GO:0055114 GO:0065003 GO:0070013 GO:0070069 GO:0070469 GO:0071840 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04380 ko04714 ko04932 ko04933 ko05010 ko05012 ko05016 ko05418 map00190 map01100 map04260 map04380 map04714 map04932 map04933 map05010 map05012 map05016 map05418

Pfam Domains

Protein Families

COX6B

Protein Analysis

125

Amino Acids

14.39

Weight (kDa)

9.63

Isoelectric Point (pI)

70.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20922
prunus_persica	Prupe.5G049000_v2.0.a1
rosa_rugosa	Rorug07G0100700.1
rosa_samantha	Rh7AG235600 Rh7BG229900 Rh7CG249500 Rh7DG240300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	292
AciI	CCGC	5 cut(s)	167, 287, 290, 292, 355
AclWI	GGATC	2 cut(s)	158, 171
AcsI	RAATTY	2 cut(s)	78, 136
AfaI	GTAC	2 cut(s)	242, 339
AgsI	TTSAA	2 cut(s)	141, 332
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
AlwI	GGATC	2 cut(s)	158, 171
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	227, 293
ApoI	RAATTY	2 cut(s)	78, 136
AvaI	CYCGRG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	163
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BfaI	CTAG	2 cut(s)	369, 376
BisI	GCNGC	3 cut(s)	290, 293, 356
BlsI	GCNGC	3 cut(s)	291, 294, 357
BmeT110I	CYCGRG	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	165, 222, 247
BmrI	ACTGGG	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bsa29I	ATCGAT	1 cut(s)	130
BsaBI	GATNNNNATC	2 cut(s)	120, 126
BsaJI	CCNNGG	2 cut(s)	224, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bse1I	ACTGG	1 cut(s)	347
Bse8I	GATNNNNATC	2 cut(s)	120, 126
BseCI	ATCGAT	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	224, 290
BseJI	GATNNNNATC	2 cut(s)	120, 126
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	4 cut(s)	213, 252, 273, 338
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	229, 295
BshVI	ATCGAT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	207
BsnI	GGCC	2 cut(s)	229, 295
BsoBI	CYCGRG	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	121, 131, 163, 254
BspACI	CCGC	5 cut(s)	167, 287, 290, 292, 355
BspANI	GGCC	2 cut(s)	229, 295
BspDI	ATCGAT	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	165, 222, 247
BspPI	GGATC	2 cut(s)	158, 171
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	224, 290
BssMI	GATC	4 cut(s)	121, 131, 163, 254
BstAUI	TGTACA	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	55, 219, 231
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	4 cut(s)	124, 134, 166, 257
BstMBI	GATC	4 cut(s)	121, 131, 163, 254
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	229, 295
BsuTUI	ATCGAT	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	55, 219, 231
CciI	TCATGA	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	241, 338
CviAII	CATG	2 cut(s)	170, 236
CviJI	RGCY	7 cut(s)	152, 206, 221, 229, 246, 295, 315
CviKI_1	RGCY	7 cut(s)	152, 206, 221, 229, 246, 295, 315
CviQI	GTAC	2 cut(s)	241, 338
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	123, 133, 165, 256
DpnII	GATC	4 cut(s)	121, 131, 163, 254
EciI	GGCGGA	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	173, 239
FaiI	YATR	9 cut(s)	59, 64, 90, 104, 146, 171, 237, 342, 366
FatI	CATG	2 cut(s)	169, 235
Fnu4HI	GCNGC	3 cut(s)	290, 293, 356
Fsp4HI	GCNGC	3 cut(s)	290, 293, 356
FspBI	CTAG	2 cut(s)	369, 376
GluI	GCNGC	3 cut(s)	290, 293, 356
HaeIII	GGCC	2 cut(s)	229, 295
Hin1II	CATG	2 cut(s)	173, 239
HinfI	GANTC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	85, 254
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	70, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	173, 239
KspI	CCGCGG	1 cut(s)	293
Kzo9I	GATC	4 cut(s)	121, 131, 163, 254
LmnI	GCTCC	2 cut(s)	226, 251
LpnPI	CCDG	3 cut(s)	203, 243, 360
MaeI	CTAG	2 cut(s)	369, 376
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	4 cut(s)	123, 133, 165, 256
MboI	GATC	4 cut(s)	121, 131, 163, 254
MboII	GAAGA	2 cut(s)	291, 344
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	2 cut(s)	78, 136
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	234, 273, 294, 316, 319
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	4 cut(s)	121, 131, 163, 254
NlaIII	CATG	2 cut(s)	173, 239
NlaIV	GGNNCC	3 cut(s)	165, 222, 247
NmeAIII	GCCGAG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	291, 294, 357
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	165, 222, 247
PsuI	RGATCY	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	242, 339
RsaNI	GTAC	2 cut(s)	241, 338
RseI	CAYNNNNRTG	1 cut(s)	363
SacII	CCGCGG	1 cut(s)	293
SatI	GCNGC	3 cut(s)	290, 293, 356
Sau3AI	GATC	4 cut(s)	121, 131, 163, 254
SchI	GAGTC	1 cut(s)	274
SetI	ASST	3 cut(s)	204, 317, 330
Sfr303I	CCGCGG	1 cut(s)	293
SgrBI	CCGCGG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	78, 136
SsiI	CCGC	5 cut(s)	167, 287, 290, 292, 355
SspMI	CTAG	2 cut(s)	369, 376
TaqI	TCGA	3 cut(s)	124, 130, 134
TasI	AATT	2 cut(s)	78, 136
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	3 cut(s)	292, 295, 358
TscAI	CASTG	1 cut(s)	365
TspRI	CASTG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	78, 136
XspI	CTAG	2 cut(s)	369, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.