Rh7DG240300

cytochrome c oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019710
Physical Location & Seq
Reverse (-)
24658004 .. 24659117
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG240300.1

Sequence Viewer

Length: 237 bp
ATGTCAGCTACCCAAATGGATCCGCATGACAAGATGAGAAGCAGAGATGTGAATAAGCCTTCTTCGCCACCACCGAGCTACAAGGAGGAGGTTGAAGACGAACATAACCCAGTTGCGCGACACTGCTATGCTAGTTACTGGCAGTTCCACAAGTGTATCAAGGACAAGGGCGATGGCACACCTCAATGTGTGAGGTTTGAGAAAAATTATAAGATTTTGTGCCCTCTTGAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX6B

Protein Analysis

78

Amino Acids

9.21

Weight (kDa)

6.88

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 39 - 78 2.2e-11 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20922
prunus_persica Prupe.5G049000_v2.0.a1
rosa_rugosa Rorug07G0100700.1
rosa_samantha Rh7AG235600 Rh7BG229900 Rh7CG249500 Rh7DG240300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AccII CGCG 1 cut(s) 118
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 14, 27
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 2 cut(s) 8, 78
AluI AGCT 2 cut(s) 8, 78
AlwI GGATC 2 cut(s) 14, 27
AspLEI GCGC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 1 cut(s) 167
BfaI CTAG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 110, 143
BseNI ACTGG 2 cut(s) 110, 143
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 23
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 14, 27
BsrI ACTGG 2 cut(s) 110, 143
BssMI GATC 1 cut(s) 19
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 118
CviAII CATG 1 cut(s) 26
CviJI RGCY 3 cut(s) 8, 58, 78
CviKI_1 RGCY 3 cut(s) 8, 58, 78
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
FaeI CATG 1 cut(s) 29
FaiI YATR 4 cut(s) 27, 105, 129, 210
FatI CATG 1 cut(s) 25
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 118
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 123, 124
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 54, 107
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 205
MnlI CCTC 5 cut(s) 79, 82, 186, 192, 234
MslI CAYNNNNRTG 2 cut(s) 126, 184
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PsiI TTATAA 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 126, 184
Sau3AI GATC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 224
SetI ASST 5 cut(s) 10, 80, 93, 184, 197
SmiMI CAYNNNNRTG 2 cut(s) 126, 184
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 132
TasI AATT 1 cut(s) 205
TscAI CASTG 1 cut(s) 128
TspRI CASTG 1 cut(s) 128
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.