Rh7BG229900

cytochrome c oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0019710
Physical Location & Seq
Reverse (-)
20074286 .. 20075595
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG229900.1

Sequence Viewer

Length: 384 bp
ATGTCGGCTGCGCAAGTGGATCCGCATGACAAGATGAGAAGCAGAGATGTGAATAAGGTGGCTCGGGGAGAGCAGGCTCCTCGGCCTGCTCATGAGTACGGCTCCATCAGATCAGCTCCTCCTAAACCGACACCGACACCGACTCCGCAGCCGCGGCCTTCTTCGCCACCACCGAGCTACAAGGAGGAGGTTGAAGATGAACATAACCCAGTTGCGCGGCACTGCTATGCTAGTTACTGGCAGTTCCACAAGTGTATCAAGGACAAGGGCGATGGCGCACCTCAATGTGTGAGGTTTGAGAAAAATTATAAGATTTTGTGCCCTCTTGAGTGGATTGAGAGGTGGGATGAAGATCAAAAGCGTGGAGTGTTAGTGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX6B

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

7.7

Isoelectric Point (pI)

68.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 72 - 119 1.6e-15 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019710)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20922
prunus_persica Prupe.5G049000_v2.0.a1
rosa_rugosa Rorug07G0100700.1
rosa_samantha Rh7AG235600 Rh7BG229900 Rh7CG249500 Rh7DG240300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc16I TGCGCA 1 cut(s) 12
AccII CGCG 2 cut(s) 154, 217
AciI CCGC 5 cut(s) 23, 146, 152, 154, 217
AclWI GGATC 2 cut(s) 14, 27
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 116, 177
AluI AGCT 2 cut(s) 116, 177
AlwI GGATC 2 cut(s) 14, 27
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 83, 155
ApeKI GCWGC 2 cut(s) 8, 148
AspLEI GCGC 3 cut(s) 13, 217, 278
AvaI CYCGRG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 323
BaeI ACNNNNGTAYC 2 cut(s) 238, 271
BamHI GGATCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 113, 266
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BfaI CTAG 1 cut(s) 231
BisI GCNGC 5 cut(s) 9, 149, 152, 155, 218
BlsI GCNGC 5 cut(s) 10, 150, 153, 156, 219
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 21, 78, 103
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 80, 152
BsaXI ACNNNNNCTCC 3 cut(s) 127, 157, 357
Bse1I ACTGG 2 cut(s) 209, 242
Bse8I GATNNNNATC 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 80, 152
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 351
BseNI ACTGG 2 cut(s) 209, 242
BseRI GAGGAG 3 cut(s) 69, 108, 200
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 154, 217
BshFI GGCC 2 cut(s) 85, 157
BsiHKCI CYCGRG 1 cut(s) 63
BsnI GGCC 2 cut(s) 85, 157
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 19, 110, 352
BspACI CCGC 5 cut(s) 23, 146, 152, 154, 217
BspANI GGCC 2 cut(s) 85, 157
BspFNI CGCG 2 cut(s) 154, 217
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 21, 78, 103
BspPI GGATC 2 cut(s) 14, 27
BsrI ACTGG 2 cut(s) 209, 242
BssECI CCNNGG 2 cut(s) 80, 152
BssMI GATC 3 cut(s) 19, 110, 352
BstC8I GCNNGC 2 cut(s) 75, 87
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 154, 217
BstHHI GCGC 3 cut(s) 13, 217, 278
BstKTI GATC 3 cut(s) 22, 113, 355
BstMBI GATC 3 cut(s) 19, 110, 352
BstMWI GCNNNNNNNGC 2 cut(s) 154, 163
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 2 cut(s) 154, 217
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 85, 157
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 75, 87
CciI TCATGA 1 cut(s) 91
CfoI GCGC 3 cut(s) 13, 217, 278
Cfr42I CCGCGG 1 cut(s) 155
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 26, 92
CviJI RGCY 9 cut(s) 8, 62, 77, 85, 102, 116, 151, 157, 177
CviKI_1 RGCY 9 cut(s) 8, 62, 77, 85, 102, 116, 151, 157, 177
CviQI GTAC 1 cut(s) 97
DpnI GATC 3 cut(s) 21, 112, 354
DpnII GATC 3 cut(s) 19, 110, 352
Eco88I CYCGRG 1 cut(s) 63
FaeI CATG 2 cut(s) 29, 95
FaiI YATR 5 cut(s) 27, 93, 204, 228, 309
FatI CATG 2 cut(s) 25, 91
Fnu4HI GCNGC 5 cut(s) 9, 149, 152, 155, 218
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 5 cut(s) 9, 149, 152, 155, 218
FspBI CTAG 1 cut(s) 231
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 3 cut(s) 12, 216, 277
GluI GCNGC 5 cut(s) 9, 149, 152, 155, 218
HaeIII GGCC 2 cut(s) 85, 157
HhaI GCGC 3 cut(s) 13, 217, 278
Hin1II CATG 2 cut(s) 29, 95
Hin6I GCGC 3 cut(s) 11, 215, 276
HinP1I GCGC 3 cut(s) 11, 215, 276
HinfI GANTC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 92, 326
HpyAV CCTTC 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 163
Hsp92II CATG 2 cut(s) 29, 95
HspAI GCGC 3 cut(s) 11, 215, 276
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 19, 110, 352
LmnI GCTCC 3 cut(s) 82, 107, 121
LpnPI CCDG 4 cut(s) 59, 99, 222, 223
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 233
MalI GATC 3 cut(s) 21, 112, 354
MboI GATC 3 cut(s) 19, 110, 352
MboII GAAGA 3 cut(s) 153, 206, 362
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 8 cut(s) 90, 129, 178, 181, 285, 291, 333, 333
MslI CAYNNNNRTG 2 cut(s) 225, 283
MspA1I CMGCKG 1 cut(s) 154
MvnI CGCG 2 cut(s) 154, 217
MwoI GCNNNNNNNGC 2 cut(s) 154, 163
NdeII GATC 3 cut(s) 19, 110, 352
NlaIII CATG 2 cut(s) 29, 95
NlaIV GGNNCC 3 cut(s) 21, 78, 103
NmeAIII GCCGAG 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 12
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PkrI GCNGC 5 cut(s) 10, 150, 153, 156, 219
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 21, 78, 103
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 225, 283
SacII CCGCGG 1 cut(s) 155
SatI GCNGC 5 cut(s) 9, 149, 152, 155, 218
Sau3AI GATC 3 cut(s) 19, 110, 352
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 60, 118, 179, 192, 283, 296, 344
Sfr303I CCGCGG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 225, 283
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 1 cut(s) 304
SsiI CCGC 5 cut(s) 23, 146, 152, 154, 217
SspMI CTAG 1 cut(s) 231
TasI AATT 1 cut(s) 304
TauI GCSGC 3 cut(s) 154, 157, 220
TscAI CASTG 1 cut(s) 227
TseI GCWGC 2 cut(s) 8, 148
TspDTI ATGAA 2 cut(s) 213, 363
TspRI CASTG 1 cut(s) 227
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.