FvH4_5g21500
MADS Family

MADS-box transcription factor PHERES 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018045
Physical Location & Seq
Forward (+)
12968957 .. 12970094
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21500.t1

Sequence Viewer

Length: 786 bp
ATGTCCTTCAACTTTATTTCATATGAACTTGGAAGGTTATTCTTTCCCATGCCAGACCAAGCTAGAGTCAAACTTGCACTGATAGATAGTGAGAGAGCTAGGAAAGCAAGCTTTAACAACAGAAAGGATGGTCTTATGAAGAAAGTGAGCGAACTTCAAACCTTGTGTGATGTGCATGTTTGTATCGTTATCTATGATCGGGGCAGTAACGAGCCATTTGTGTGGCCTAACCGCCCAAAAGTGGAGGAACTGATCAAGAGATACCTGAGACTACCAGGTTTTATGCGACTTAAGAAGGCGCTATGCCAAGAGAGGTACCTCAAGGAGAAGGTTGAAAAAATGCAAGAGAAGAACAACATAATTCTTAGATCGAACACTGCGAAGGAGATGGTAGAACTCATGCACCAAAACCAAAATGGTAAGCCGATTTATGAACTTGACCTTTATCAAACATATGCTTTGCTTTACTTTTTGGAAGCAAAGATGAAAGAGATCCAGATCCAGATCGCTTTCTTTGAACAAGCCAGTGCTCAAAGTGAAACTGCCAATAAGTTGGGGGTGCCCATGGGGAATTCTATGGAGTGGCCATACAAAATTCTTGGAGTGGACAATGATAGATGTGGTAATGGAAATGAGCTGGGGTTTCAGATGCTGCACCAAGGTTATGTGAACAAGGATGATGCCCGCGGCTTGCCGCGGTTTTTTGCAATGTTGTCTGTGTTAATGGAGCACAACAGTATGATTCATTATATATTTTCTTACCAGCTGGAAGGACAATATATATAA

Protein Analysis

262

Amino Acids

30.59

Weight (kDa)

8.72

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 28 - 75 3.1e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21500
rosa_chinensis RchiOBHm_Chr7g0208901
rosa_laevigata RLG00000003182
rosa_multiflora Rmu_sc0000532.1_g000022
rosa_roxburghii Rroxscaffold_3G00250040
rosa_rugosa Rorug07G0107300
rosa_samantha Rh7AG242400 Rh7BG237200 Rh7CG257300 Rh7DG248400
rosa_wichuraiana Rw7G020520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 2 cut(s) 315, 559
AccII CGCG 2 cut(s) 687, 697
AciI CCGC 5 cut(s) 232, 685, 687, 695, 697
AclWI GGATC 2 cut(s) 487, 493
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 2 cut(s) 571, 594
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 4 cut(s) 10, 158, 335, 518
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 62, 98, 111, 637, 766
AluI AGCT 5 cut(s) 62, 98, 111, 637, 766
Alw21I GWGCWC 2 cut(s) 532, 732
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 487, 493
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 224, 584
ApeKI GCWGC 1 cut(s) 652
ApoI RAATTY 2 cut(s) 571, 594
Asp718I GGTACC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 564
BalI TGGCCA 1 cut(s) 586
BanI GGYRCC 2 cut(s) 315, 559
Bbv12I GWGCWC 2 cut(s) 532, 732
BbvI GCAGC 1 cut(s) 639
BccI CCATC 2 cut(s) 122, 382
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 63, 99
BfoI RGCGCY 1 cut(s) 302
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 3 cut(s) 653, 688, 695
BlsI GCNGC 3 cut(s) 654, 689, 696
Bme1390I CCNGG 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 317, 561
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 639, 670
BpuEI CTTGAG 1 cut(s) 305
BsaBI GATNNNNATC 2 cut(s) 497, 503
BsaJI CCNNGG 4 cut(s) 564, 658, 685, 695
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 2 cut(s) 497, 503
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 4 cut(s) 564, 658, 685, 695
BseGI GGATG 2 cut(s) 133, 682
BseJI GATNNNNATC 2 cut(s) 497, 503
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 1 cut(s) 639
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 2 cut(s) 687, 697
BshFI GGCC 2 cut(s) 226, 586
BshNI GGYRCC 2 cut(s) 315, 559
BsiHKAI GWGCWC 2 cut(s) 532, 732
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 226, 586
Bsp1286I GDGCHC 3 cut(s) 532, 564, 732
Bsp143I GATC 6 cut(s) 196, 252, 368, 492, 498, 504
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 5 cut(s) 232, 685, 687, 695, 697
BspANI GGCC 2 cut(s) 226, 586
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 2 cut(s) 687, 697
BspLI GGNNCC 2 cut(s) 317, 561
BspPI GGATC 2 cut(s) 487, 493
BspT107I GGYRCC 2 cut(s) 315, 559
BspTI CTTAAG 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 4 cut(s) 564, 658, 685, 695
BssMI GATC 6 cut(s) 196, 252, 368, 492, 498, 504
BssT1I CCWWGG 2 cut(s) 564, 658
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 109, 685, 692
BstDEI CTNAG 2 cut(s) 266, 365
BstDSI CCRYGG 3 cut(s) 564, 685, 695
BstF5I GGATG 2 cut(s) 133, 682
BstFNI CGCG 2 cut(s) 687, 697
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 6 cut(s) 199, 255, 371, 495, 501, 507
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 6 cut(s) 196, 252, 368, 492, 498, 504
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 564
BstUI CGCG 2 cut(s) 687, 697
BstV1I GCAGC 1 cut(s) 639
BstX2I RGATCY 2 cut(s) 492, 498
BstXI CCANNNNNNTGG 2 cut(s) 222, 553
BstYI RGATCY 2 cut(s) 492, 498
BsuRI GGCC 2 cut(s) 226, 586
BtgI CCRYGG 3 cut(s) 564, 685, 695
BtsCI GGATG 2 cut(s) 133, 682
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 3 cut(s) 77, 375, 532
Cac8I GCNNGC 3 cut(s) 109, 685, 692
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 1 cut(s) 301
Cfr42I CCGCGG 2 cut(s) 688, 698
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 49, 176, 400, 565
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 266, 365
DpnI GATC 6 cut(s) 198, 254, 370, 494, 500, 506
DpnII GATC 6 cut(s) 196, 252, 368, 492, 498, 504
EaeI YGGCCR 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 564, 658
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 564, 658
ErhI CCWWGG 2 cut(s) 564, 658
FaeI CATG 4 cut(s) 52, 179, 403, 568
FatI CATG 4 cut(s) 48, 175, 399, 564
FauI CCCGC 1 cut(s) 692
FauNDI CATATG 2 cut(s) 22, 454
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 653, 688, 695
FokI GGATG 2 cut(s) 140, 689
Fsp4HI GCNGC 3 cut(s) 653, 688, 695
FspBI CTAG 2 cut(s) 63, 99
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 653, 688, 695
GsaI CCCAGC 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 226, 586
HhaI GCGC 1 cut(s) 301
Hin1II CATG 4 cut(s) 52, 179, 403, 568
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 2 cut(s) 66, 742
Hpy166II GTNNAC 2 cut(s) 607, 670
Hpy188I TCNGA 1 cut(s) 648
Hpy188III TCNNGA 3 cut(s) 256, 496, 502
Hpy8I GTNNAC 2 cut(s) 607, 670
HpyAV CCTTC 6 cut(s) 16, 27, 289, 322, 376, 764
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4V TGCA 6 cut(s) 77, 175, 343, 403, 655, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 266, 365
Hsp92II CATG 4 cut(s) 52, 179, 403, 568
HspAI GCGC 1 cut(s) 299
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 252
KspI CCGCGG 2 cut(s) 688, 698
Kzo9I GATC 6 cut(s) 196, 252, 368, 492, 498, 504
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 1 cut(s) 639
LweI GCATC 2 cut(s) 639, 670
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 63, 99
MaeIII GTNAC 1 cut(s) 206
MalI GATC 6 cut(s) 198, 254, 370, 494, 500, 506
MboI GATC 6 cut(s) 196, 252, 368, 492, 498, 504
MboII GAAGA 2 cut(s) 151, 361
MflI RGATCY 2 cut(s) 492, 498
MhlI GDGCHC 3 cut(s) 532, 564, 732
MlsI TGGCCA 1 cut(s) 586
MluCI AATT 3 cut(s) 360, 571, 594
MluNI TGGCCA 1 cut(s) 586
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 3 cut(s) 238, 306, 329
Mox20I TGGCCA 1 cut(s) 586
MscI TGGCCA 1 cut(s) 586
MseI TTAA 3 cut(s) 114, 291, 722
MslI CAYNNNNRTG 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 586
MspA1I CMGCKG 3 cut(s) 687, 697, 766
MspCI CTTAAG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 2 cut(s) 687, 697
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 564
NdeI CATATG 2 cut(s) 22, 454
NdeII GATC 6 cut(s) 196, 252, 368, 492, 498, 504
NlaIII CATG 4 cut(s) 52, 179, 403, 568
NlaIV GGNNCC 2 cut(s) 317, 561
NspI RCATGY 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PfeI GAWTC 1 cut(s) 742
PkrI GCNGC 3 cut(s) 654, 689, 696
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 317, 561
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 2 cut(s) 492, 498
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 220
SacII CCGCGG 2 cut(s) 688, 698
SaqAI TTAA 3 cut(s) 114, 291, 722
SatI GCNGC 3 cut(s) 653, 688, 695
Sau3AI GATC 6 cut(s) 196, 252, 368, 492, 498, 504
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 3 cut(s) 532, 564, 732
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 2 cut(s) 639, 670
Sfr303I CCGCGG 2 cut(s) 688, 698
SgrBI CCGCGG 2 cut(s) 688, 698
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 2 cut(s) 290, 320
SmoI CTYRAG 2 cut(s) 290, 320
Sse9I AATT 3 cut(s) 360, 571, 594
SsiI CCGC 5 cut(s) 232, 685, 687, 695, 697
SspMI CTAG 2 cut(s) 63, 99
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 2 cut(s) 564, 658
TaaI ACNGT 1 cut(s) 737
TaqI TCGA 1 cut(s) 371
TasI AATT 3 cut(s) 360, 571, 594
TauI GCSGC 2 cut(s) 690, 697
TfiI GAWTC 1 cut(s) 742
Tru1I TTAA 3 cut(s) 114, 291, 722
Tru9I TTAA 3 cut(s) 114, 291, 722
TscAI CASTG 3 cut(s) 84, 382, 532
TseI GCWGC 1 cut(s) 652
TspDTI ATGAA 6 cut(s) 9, 39, 152, 447, 500, 734
TspRI CASTG 3 cut(s) 84, 382, 532
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 2 cut(s) 571, 594
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 2 cut(s) 63, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.