Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0018045

Physical Location & Seq

Genomic Coordinates Forward (+)

100447 .. 101367

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000532.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcctagggctagggtcaaacttgcatggatagggagtgagagtgctaggagagcgagcttcaacaagaggaaagacggtcttgtgaagaaagtgagcgagcttagcactttgtgcgatgtgcctgcttgtatcattatctatggtcggggcagtaaccagccgattgtatggcctgaccgcccaagagcagaggaagtgatccgcagatacctgagcctaccaggttatgtgcggtgcaagaagacgctgagccaagagagttacctcaaggagaaggtcgccaaaatggaagagaagcacaacaaaactgtcagatccaacactgtgaaagacatggaagatctcatgcgccaaggtcagaatggtaagccgttatatgaacttgacattaatcaaacatatggtttgcttaactttgtggaggagaagatgaaagagatccagaaccagttcgctttctctgagcaagctggtggtcctagttacaccagtgtccacaatgaacccgccaataacttgggggtgcccctggggactggtatggagtggccatatggaatttttggagtaggaggtgatggaagtagtagtggaactgatatggggtttccgatgttgcctcaatgttatgggaataatattggaggtagcagcagtgttaatgtggtgcccaatatgataccatacaatggtaacattggaaattttggaggtgatggtagtgtagggttacctcaggtgaattatttgggcaatgatattactgggaatggaagtcagatggggtactttgggatgctgcctcaatattatggggcaaatgtgataacatcaaatggtagtattattggatggacaataggaaacaccaacggagccaacagtgccggtgaaggtgatgctgcagaccttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

306

Amino Acids

33.14

Weight (kDa)

6.75

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21500
rosa_chinensis	RchiOBHm_Chr7g0208901
rosa_laevigata	RLG00000003182
rosa_multiflora	Rmu_sc0000532.1_g000022
rosa_roxburghii	Rroxscaffold_3G00250040
rosa_rugosa	Rorug07G0107300
rosa_samantha	Rh7AG242400 Rh7BG237200 Rh7CG257300 Rh7DG248400
rosa_wichuraiana	Rw7G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	526, 670
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	4 cut(s)	181, 205, 235, 510
AclWI	GGATC	3 cut(s)	196, 312, 436
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	561, 706
AdeI	CACNNNGTG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	223, 531
AluBI	AGCT	3 cut(s)	60, 103, 473
AluI	AGCT	3 cut(s)	60, 103, 473
AlwI	GGATC	3 cut(s)	196, 312, 436
AoxI	GGCC	2 cut(s)	173, 551
ApeKI	GCWGC	3 cut(s)	654, 802, 905
ApoI	RAATTY	2 cut(s)	561, 706
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	452
AspA2I	CCTAGG	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	5 cut(s)	590, 728, 754, 905, 911
AvaII	GGWCC	1 cut(s)	479
AvrII	CCTAGG	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	2 cut(s)	531, 675
BalI	TGGCCA	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	526, 670
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	666, 789, 892
BccI	CCATC	4 cut(s)	575, 713, 778, 849
BceAI	ACGGC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	225, 533
BfaI	CTAG	4 cut(s)	6, 12, 48, 483
BfmI	CTRYAG	1 cut(s)	906
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	3 cut(s)	655, 803, 906
BlnI	CCTAGG	1 cut(s)	5
BlpI	GCTNAGC	2 cut(s)	104, 251
BlsI	GCNGC	3 cut(s)	656, 804, 907
Bme1390I	CCNGG	2 cut(s)	225, 533
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	528, 672, 880
BmrFI	CCNGG	2 cut(s)	225, 533
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	789, 892
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu1102I	GCTNAGC	2 cut(s)	104, 251
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	5, 355, 531, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	4 cut(s)	451, 492, 544, 772
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	2 cut(s)	225, 533
BseDI	CCNNGG	4 cut(s)	5, 355, 531, 532
BseGI	GGATG	2 cut(s)	804, 860
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	4 cut(s)	206, 242, 456, 752
BseNI	ACTGG	4 cut(s)	451, 492, 544, 772
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	2 cut(s)	531, 675
BseXI	GCAGC	3 cut(s)	666, 789, 892
BshFI	GGCC	2 cut(s)	175, 553
BshNI	GGYRCC	2 cut(s)	526, 670
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	175, 553
Bsp1286I	GDGCHC	2 cut(s)	531, 675
Bsp143I	GATC	4 cut(s)	201, 317, 343, 441
Bsp1720I	GCTNAGC	2 cut(s)	104, 251
BspACI	CCGC	4 cut(s)	181, 205, 235, 510
BspANI	GGCC	2 cut(s)	175, 553
BspCNI	CTCAG	4 cut(s)	207, 243, 457, 751
BspLI	GGNNCC	3 cut(s)	528, 672, 880
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	3 cut(s)	196, 312, 436
BspT107I	GGYRCC	2 cut(s)	526, 670
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	4 cut(s)	451, 492, 544, 772
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	4 cut(s)	5, 355, 531, 532
BssMI	GATC	4 cut(s)	201, 317, 343, 441
BssT1I	CCWWGG	2 cut(s)	5, 355
Bst2UI	CCWGG	2 cut(s)	225, 533
Bst4CI	ACNGT	4 cut(s)	80, 313, 328, 887
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	4 cut(s)	58, 101, 126, 471
BstDEI	CTNAG	5 cut(s)	104, 215, 251, 465, 738
BstEII	GGTNACC	1 cut(s)	732
BstF5I	GGATG	2 cut(s)	804, 860
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	4 cut(s)	204, 320, 346, 444
BstMBI	GATC	4 cut(s)	201, 317, 343, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 105, 114, 887
BstNI	CCWGG	2 cut(s)	225, 533
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	223, 531
BstSFI	CTRYAG	1 cut(s)	906
BstSLI	GKGCMC	2 cut(s)	531, 675
BstV1I	GCAGC	3 cut(s)	666, 789, 892
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	3 cut(s)	317, 343, 441
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	3 cut(s)	317, 343, 441
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	175, 553
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	804, 860
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	4 cut(s)	324, 499, 664, 892
Cac8I	GCNNGC	4 cut(s)	58, 101, 126, 471
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	256
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	3 cut(s)	27, 337, 349
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	5 cut(s)	104, 215, 251, 465, 738
DpnI	GATC	4 cut(s)	203, 319, 345, 443
DpnII	GATC	4 cut(s)	201, 317, 343, 441
DraIII	CACNNNGTG	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	5, 355
Eco47I	GGWCC	1 cut(s)	479
Eco81I	CCTNAGG	1 cut(s)	738
Eco91I	GGTNACC	1 cut(s)	732
EcoO65I	GGTNACC	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	223, 531
EcoT14I	CCWWGG	2 cut(s)	5, 355
ErhI	CCWWGG	2 cut(s)	5, 355
FaeI	CATG	3 cut(s)	30, 340, 352
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	3 cut(s)	26, 336, 348
FauI	CCCGC	1 cut(s)	517
FauNDI	CATATG	2 cut(s)	403, 556
Fnu4HI	GCNGC	3 cut(s)	655, 803, 906
FokI	GGATG	2 cut(s)	811, 867
Fsp4HI	GCNGC	3 cut(s)	655, 803, 906
FspBI	CTAG	4 cut(s)	6, 12, 48, 483
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	3 cut(s)	655, 803, 906
HaeIII	GGCC	2 cut(s)	175, 553
HapII	CCGG	1 cut(s)	891
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	30, 340, 352
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	5 cut(s)	590, 728, 754, 905, 911
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	5 cut(s)	317, 363, 466, 615, 783
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	2 cut(s)	271, 890
HpyCH4III	ACNGT	4 cut(s)	80, 313, 328, 887
HpyCH4V	TGCA	3 cut(s)	26, 240, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 105, 114, 887
HpyF3I	CTNAG	5 cut(s)	104, 215, 251, 465, 738
Hsp92II	CATG	3 cut(s)	30, 340, 352
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	201, 317, 343, 441
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	3 cut(s)	666, 789, 892
LweI	GCATC	2 cut(s)	789, 892
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	4 cut(s)	6, 12, 48, 483
MaeIII	GTNAC	5 cut(s)	155, 263, 485, 695, 732
MalI	GATC	4 cut(s)	203, 319, 345, 443
MboI	GATC	4 cut(s)	201, 317, 343, 441
MboII	GAAGA	5 cut(s)	100, 256, 305, 353, 442
MflI	RGATCY	3 cut(s)	317, 343, 441
MhlI	GDGCHC	2 cut(s)	531, 675
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	3 cut(s)	561, 706, 745
MluNI	TGGCCA	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	4 cut(s)	393, 414, 663, 919
Msp20I	TGGCCA	1 cut(s)	553
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	2 cut(s)	225, 533
MvaI	CCWGG	2 cut(s)	225, 533
MwoI	GCNNNNNNNGC	4 cut(s)	53, 105, 114, 887
NdeI	CATATG	2 cut(s)	403, 556
NdeII	GATC	4 cut(s)	201, 317, 343, 441
NlaIII	CATG	3 cut(s)	30, 340, 352
NlaIV	GGNNCC	3 cut(s)	528, 672, 880
PasI	CCCWGGG	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	656, 804, 907
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	223, 531
PspEI	GGTNACC	1 cut(s)	732
PspGI	CCWGG	2 cut(s)	223, 531
PspN4I	GGNNCC	3 cut(s)	528, 672, 880
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	3 cut(s)	317, 343, 441
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
SaqAI	TTAA	4 cut(s)	393, 414, 663, 919
SatI	GCNGC	3 cut(s)	655, 803, 906
Sau3AI	GATC	4 cut(s)	201, 317, 343, 441
Sau96I	GGNCC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	225, 533
SduI	GDGCHC	2 cut(s)	531, 675
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	789, 892
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	561, 706, 745
SsiI	CCGC	4 cut(s)	181, 205, 235, 510
SspI	AATATT	2 cut(s)	643, 812
SspMI	CTAG	4 cut(s)	6, 12, 48, 483
StyD4I	CCNGG	2 cut(s)	223, 531
StyI	CCWWGG	2 cut(s)	5, 355
TaaI	ACNGT	4 cut(s)	80, 313, 328, 887
TasI	AATT	3 cut(s)	561, 706, 745
Tru1I	TTAA	4 cut(s)	393, 414, 663, 919
Tru9I	TTAA	4 cut(s)	393, 414, 663, 919
TscAI	CASTG	4 cut(s)	331, 499, 664, 892
TseI	GCWGC	3 cut(s)	654, 802, 905
TspDTI	ATGAA	3 cut(s)	396, 449, 519
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	4 cut(s)	331, 499, 664, 892
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	561, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	4 cut(s)	6, 12, 48, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.