Rh7DG248400
MADS Family

MADS-box transcription factor PHERES 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018045
Physical Location & Seq
Forward (+)
25699758 .. 25700678
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG248400.1

Sequence Viewer

Length: 921 bp
ATGCCTAGGGCTAGGGTCAAACTTGCATGGATAGGGAGTGAGAGTGCTAGGAGAGCGAGCTTCAACAAGAGGAAAGATGGTCTTGTGAAGAAAGTGAGCGAGCTTAGCACTTTGTGTGATGTGCCTGCTTGTATCATTATCTATGGTCGGGGCAGTAACCAGCCGATTGTATGGCCTGACCGCCCAAGAGCAGAGGAAGTGATCCGCAGATACCTGAGCCTACCAGGTTATGTGCGGTGCAAGAAGACGCTGAGCCAAGAGAGTTACCTCAAGGAGAAGGTCGCCAAAATGGAAGAGAAGCACAACAAAACTGTCAGATCCAACACTGTGAAAGACATGGATGATCTCATGCGCCAAGGTCAGAATGGTAAGCCGTTATATGAACTTGACATTAATCAAACTTATGGTTTGCTTAACTTTGTGGAGGAGAAGATGAAAGAGATCCAGAACCAGTTCGCTTTCTCTGAGCAAGCTGGTGGTCCTAGTTACACCAGTGTCCACAATGAACCCGCCAATAACTTGGGGGTGCCCCTGGGGACTGGTATGGAGTGGCCATATGGAATTTTTGGAGTAGGAGGTGATGGAAGTAGTAGTGGAACTGATATGGGGTTTCCGATGTTGCCTCAATGTTATGGGAATAATATTGGAGGTAGCAGCAGTGTTAATGTGGTGCCCAATATGATACCATACAATGGTAACATTGGAAATTTTGGAGATGATGGTAGTGTAGGGTTACCTCAGGTGAATTATTTGGGCAATGATATTACTGGGAATGGAAGTCAGATGGGGTACTTTGGGATGCTGCCTCAATATTATGGGGCTAATGTGATAACATCAAATGGTAGTATTATTGGATGGACAATAGGAAACACCAACGGAGCCAACAGTGCCGGTGAAGGTGATGCTGCAGGCCTTCCTTAA

Protein Analysis

306

Amino Acids

33.13

Weight (kDa)

6.75

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 11 - 50 3.1e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018045)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21500
rosa_chinensis RchiOBHm_Chr7g0208901
rosa_laevigata RLG00000003182
rosa_multiflora Rmu_sc0000532.1_g000022
rosa_roxburghii Rroxscaffold_3G00250040
rosa_rugosa Rorug07G0107300
rosa_samantha Rh7AG242400 Rh7BG237200 Rh7CG257300 Rh7DG248400
rosa_wichuraiana Rw7G020520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 526, 670
AccB7I CCANNNNNTGG 1 cut(s) 692
AciI CCGC 4 cut(s) 181, 205, 235, 510
AclWI GGATC 3 cut(s) 196, 312, 436
AcoI YGGCCR 1 cut(s) 551
AcsI RAATTY 2 cut(s) 561, 706
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 1 cut(s) 791
AfiI CCNNNNNNNGG 1 cut(s) 692
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 223, 531
AluBI AGCT 3 cut(s) 60, 103, 473
AluI AGCT 3 cut(s) 60, 103, 473
AlwI GGATC 3 cut(s) 196, 312, 436
AoxI GGCC 3 cut(s) 173, 551, 910
ApeKI GCWGC 3 cut(s) 654, 802, 905
ApoI RAATTY 2 cut(s) 561, 706
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 590, 754, 905, 911
AvaII GGWCC 1 cut(s) 479
AvrII CCTAGG 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 738
BaeGI GKGCMC 2 cut(s) 531, 675
BalI TGGCCA 1 cut(s) 553
BanI GGYRCC 2 cut(s) 526, 670
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 666, 789, 892
BccI CCATC 5 cut(s) 71, 575, 713, 778, 849
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 225, 533
BfaI CTAG 4 cut(s) 6, 12, 48, 483
BfmI CTRYAG 1 cut(s) 906
BisI GCNGC 3 cut(s) 655, 803, 906
BlnI CCTAGG 1 cut(s) 5
BlpI GCTNAGC 2 cut(s) 104, 251
BlsI GCNGC 3 cut(s) 656, 804, 907
Bme1390I CCNGG 2 cut(s) 225, 533
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 528, 672, 880
BmrFI CCNGG 2 cut(s) 225, 533
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 2 cut(s) 789, 892
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 2 cut(s) 104, 251
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 4 cut(s) 5, 355, 531, 532
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 4 cut(s) 451, 492, 544, 772
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 2 cut(s) 225, 533
BseDI CCNNGG 4 cut(s) 5, 355, 531, 532
BseGI GGATG 3 cut(s) 346, 804, 860
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 4 cut(s) 206, 242, 456, 752
BseNI ACTGG 4 cut(s) 451, 492, 544, 772
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 2 cut(s) 531, 675
BseXI GCAGC 3 cut(s) 666, 789, 892
BshFI GGCC 3 cut(s) 175, 553, 912
BshNI GGYRCC 2 cut(s) 526, 670
BsiSI CCGG 1 cut(s) 891
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 3 cut(s) 175, 553, 912
Bsp1286I GDGCHC 2 cut(s) 531, 675
Bsp143I GATC 4 cut(s) 201, 317, 343, 441
Bsp1720I GCTNAGC 2 cut(s) 104, 251
BspACI CCGC 4 cut(s) 181, 205, 235, 510
BspANI GGCC 3 cut(s) 175, 553, 912
BspCNI CTCAG 4 cut(s) 207, 243, 457, 751
BspLI GGNNCC 3 cut(s) 528, 672, 880
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 3 cut(s) 196, 312, 436
BspT107I GGYRCC 2 cut(s) 526, 670
BsrDI GCAATG 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 4 cut(s) 451, 492, 544, 772
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 4 cut(s) 5, 355, 531, 532
BssMI GATC 4 cut(s) 201, 317, 343, 441
BssT1I CCWWGG 2 cut(s) 5, 355
Bst2UI CCWGG 2 cut(s) 225, 533
Bst4CI ACNGT 3 cut(s) 313, 328, 887
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 58, 101, 126, 471, 910
BstDEI CTNAG 5 cut(s) 104, 215, 251, 465, 738
BstEII GGTNACC 1 cut(s) 732
BstF5I GGATG 3 cut(s) 346, 804, 860
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 204, 320, 346, 444
BstMBI GATC 4 cut(s) 201, 317, 343, 441
BstMWI GCNNNNNNNGC 3 cut(s) 53, 105, 887
BstNI CCWGG 2 cut(s) 225, 533
BstPI GGTNACC 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 223, 531
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 2 cut(s) 531, 675
BstV1I GCAGC 3 cut(s) 666, 789, 892
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 317, 441
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 2 cut(s) 317, 441
Bsu36I CCTNAGG 1 cut(s) 738
BsuRI GGCC 3 cut(s) 175, 553, 912
BtsCI GGATG 3 cut(s) 346, 804, 860
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 4 cut(s) 324, 499, 664, 892
Cac8I GCNNGC 5 cut(s) 58, 101, 126, 471, 910
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 256
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 1 cut(s) 790
CviAII CATG 3 cut(s) 27, 337, 349
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 5 cut(s) 104, 215, 251, 465, 738
DpnI GATC 4 cut(s) 203, 319, 345, 443
DpnII GATC 4 cut(s) 201, 317, 343, 441
DraIII CACNNNGTG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 5, 355
Eco147I AGGCCT 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 738
Eco91I GGTNACC 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 732
EcoRII CCWGG 2 cut(s) 223, 531
EcoT14I CCWWGG 2 cut(s) 5, 355
ErhI CCWWGG 2 cut(s) 5, 355
FaeI CATG 3 cut(s) 30, 340, 352
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 550
FatI CATG 3 cut(s) 26, 336, 348
FauI CCCGC 1 cut(s) 517
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 655, 803, 906
FokI GGATG 3 cut(s) 353, 811, 867
Fsp4HI GCNGC 3 cut(s) 655, 803, 906
FspBI CTAG 4 cut(s) 6, 12, 48, 483
GlaI GCGC 1 cut(s) 353
GluI GCNGC 3 cut(s) 655, 803, 906
HaeIII GGCC 3 cut(s) 175, 553, 912
HapII CCGG 1 cut(s) 891
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 30, 340, 352
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HpaII CCGG 1 cut(s) 891
HphI GGTGA 4 cut(s) 590, 754, 905, 911
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 5 cut(s) 317, 363, 466, 615, 783
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 1 cut(s) 499
HpyAV CCTTC 2 cut(s) 271, 890
HpyCH4III ACNGT 3 cut(s) 313, 328, 887
HpyCH4V TGCA 3 cut(s) 26, 240, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 105, 887
HpyF3I CTNAG 5 cut(s) 104, 215, 251, 465, 738
Hsp92II CATG 3 cut(s) 30, 340, 352
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 4 cut(s) 201, 317, 343, 441
LmnI GCTCC 1 cut(s) 878
Lsp1109I GCAGC 3 cut(s) 666, 789, 892
LweI GCATC 2 cut(s) 789, 892
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 4 cut(s) 6, 12, 48, 483
MaeIII GTNAC 5 cut(s) 155, 263, 485, 695, 732
MalI GATC 4 cut(s) 203, 319, 345, 443
MboI GATC 4 cut(s) 201, 317, 343, 441
MboII GAAGA 4 cut(s) 100, 256, 305, 442
MflI RGATCY 2 cut(s) 317, 441
MhlI GDGCHC 2 cut(s) 531, 675
MlsI TGGCCA 1 cut(s) 553
MluCI AATT 3 cut(s) 561, 706, 745
MluNI TGGCCA 1 cut(s) 553
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 63, 187, 278, 418, 569, 633, 641, 747, 816
Mox20I TGGCCA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 553
MseI TTAA 4 cut(s) 393, 414, 663, 919
Msp20I TGGCCA 1 cut(s) 553
MspI CCGG 1 cut(s) 891
MspR9I CCNGG 2 cut(s) 225, 533
MvaI CCWGG 2 cut(s) 225, 533
MwoI GCNNNNNNNGC 3 cut(s) 53, 105, 887
NdeI CATATG 1 cut(s) 556
NdeII GATC 4 cut(s) 201, 317, 343, 441
NlaIII CATG 3 cut(s) 30, 340, 352
NlaIV GGNNCC 3 cut(s) 528, 672, 880
PasI CCCWGGG 1 cut(s) 532
PceI AGGCCT 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 3 cut(s) 656, 804, 907
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 223, 531
PspEI GGTNACC 1 cut(s) 732
PspGI CCWGG 2 cut(s) 223, 531
PspN4I GGNNCC 3 cut(s) 528, 672, 880
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 2 cut(s) 317, 441
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
SaqAI TTAA 4 cut(s) 393, 414, 663, 919
SatI GCNGC 3 cut(s) 655, 803, 906
Sau3AI GATC 4 cut(s) 201, 317, 343, 441
Sau96I GGNCC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 225, 533
SduI GDGCHC 2 cut(s) 531, 675
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 2 cut(s) 789, 892
SfcI CTRYAG 1 cut(s) 906
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 561, 706, 745
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 4 cut(s) 181, 205, 235, 510
SspI AATATT 2 cut(s) 643, 812
SspMI CTAG 4 cut(s) 6, 12, 48, 483
StuI AGGCCT 1 cut(s) 912
StyD4I CCNGG 2 cut(s) 223, 531
StyI CCWWGG 2 cut(s) 5, 355
TaaI ACNGT 3 cut(s) 313, 328, 887
TasI AATT 3 cut(s) 561, 706, 745
Tru1I TTAA 4 cut(s) 393, 414, 663, 919
Tru9I TTAA 4 cut(s) 393, 414, 663, 919
TscAI CASTG 4 cut(s) 331, 499, 664, 892
TseI GCWGC 3 cut(s) 654, 802, 905
TspDTI ATGAA 3 cut(s) 396, 449, 519
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 4 cut(s) 331, 499, 664, 892
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 2 cut(s) 561, 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 4 cut(s) 6, 12, 48, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.