Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016016

Physical Location & Seq

Genomic Coordinates Reverse (-)

14060967 .. 14065215

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGTAGTTCGTCGCCGGCGCATTCTTCGATATCGACGACGGCAATTGCCGGAGAAAGAAATGGAGGCAGCAATGGTAGTGGTGCTGCTGCTTTGTCCACAGACGATTTCTACTTCCCAACTGATCTCATTTCGATTCAGGATCGAAAAGACGAGGCAATGCTTGTTTTAAAGGCCAATCTCATGGCTGCACTTAATAAGGAGGTTAAATCGCTCGATGAAGATAGCTGGATGTTTGAAGGGCCACGGTCTCGTATCAACCTAATATCCAGACAAGGGGGTTTTCTCCAGAAGCGACTTGGAATTTCAAAGAATTGGAATTTGGCCGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0010997 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0040008 GO:0042176 GO:0043934 GO:0044703 GO:0044877 GO:0045732 GO:0045926 GO:0046620 GO:0046621 GO:0048229 GO:0048236 GO:0048518 GO:0048519 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051321 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.07

Weight (kDa)

8.09

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32310
fragaria_vesca	FvH4_5g22750
malus_domestica	MD06G1038000.v1.1
prunus_persica	Prupe.5G030900_v2.0.a1
pyrus_communis	pycom06g03170
rosa_chinensis	RchiOBHm_Chr7g0211351
rosa_laevigata	RLG00000003007
rosa_multiflora	Rmu_sc0001226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247910
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh7AG257700 Rh7BG251800 Rh7CG274400 Rh7DG264100
rosa_wichuraiana	Rw7G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	303, 319
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	239, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	3 cut(s)	174, 242, 324
ApeKI	GCWGC	4 cut(s)	69, 86, 89, 188
ApoI	RAATTY	2 cut(s)	303, 319
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	242, 329
AvaII	GGWCC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	73, 76, 81, 175
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	70, 87, 90, 189
BlsI	GCNGC	4 cut(s)	71, 88, 91, 190
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	242, 329
BpmI	CTGGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	79, 165
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	2 cut(s)	79, 165
BseXI	GCAGC	4 cut(s)	73, 76, 81, 175
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	176, 244, 326
BsiSI	CCGG	3 cut(s)	17, 51, 327
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	176, 244, 326
Bso31I	GGTCTC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	124, 142
BspANI	GGCC	3 cut(s)	176, 244, 326
BspPI	GGATC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	79, 165
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	124, 142
Bst4CI	ACNGT	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	127, 145
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	124, 142
BstV1I	GCAGC	4 cut(s)	73, 76, 81, 175
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	176, 244, 326
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	242, 329
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	176, 188, 228, 244, 326
CviKI_1	RGCY	5 cut(s)	176, 188, 228, 244, 326
DpnI	GATC	2 cut(s)	126, 144
DpnII	GATC	2 cut(s)	124, 142
DraI	TTTAAA	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	33
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	70, 87, 90, 189
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	70, 87, 90, 189
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	4 cut(s)	70, 87, 90, 189
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	176, 244, 326
HapII	CCGG	3 cut(s)	17, 51, 327
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	3 cut(s)	17, 51, 327
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	140, 270, 289
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	3 cut(s)	16, 40, 43
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	124, 142
LpnPI	CCDG	6 cut(s)	30, 64, 125, 214, 283, 302
Lsp1109I	GCAGC	4 cut(s)	73, 76, 81, 175
MalI	GATC	2 cut(s)	126, 144
MboI	GATC	2 cut(s)	124, 142
MboII	GAAGA	2 cut(s)	18, 233
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	4 cut(s)	45, 303, 313, 319
MnlI	CCTC	3 cut(s)	59, 148, 196
MreI	CGCCGGCG	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	16
MseI	TTAA	3 cut(s)	170, 195, 207
MspI	CCGG	3 cut(s)	17, 51, 327
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	22
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	2 cut(s)	124, 142
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	71, 88, 91, 190
PspPI	GGNCC	2 cut(s)	242, 329
SaqAI	TTAA	3 cut(s)	170, 195, 207
SatI	GCNGC	4 cut(s)	70, 87, 90, 189
Sau3AI	GATC	2 cut(s)	124, 142
Sau96I	GGNCC	2 cut(s)	242, 329
SetI	ASST	3 cut(s)	207, 230, 264
SgrAI	CRCCGGYG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	4 cut(s)	45, 303, 313, 319
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	29, 35, 134, 145, 216
TasI	AATT	4 cut(s)	45, 303, 313, 319
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	170, 195, 207
Tru9I	TTAA	3 cut(s)	170, 195, 207
TseI	GCWGC	4 cut(s)	69, 86, 89, 188
TspDTI	ATGAA	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	303, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.