Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016016

Physical Location & Seq

Genomic Coordinates Reverse (-)

4860829 .. 4863834

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1038000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGTAATTCGAATTCATCGCCGGCACATTCGTCGATATCGACGACAGCGATAGCCGGAGAAAGAGAACGAAGCAATTCCAATCCTGCCGCCGCCGCCGCTCTCTCCGACGACCTCTTCTTCCCCTCCGACCTCATTTCCATTCAAGATCGCAAACAAGAAGCATTACTTGTTATAAAATCCGATCTTATGGATGCACTTAACAAGGTGGTTAAATCCCTTGAAGAAGATAATTGGATGTTCGAAGGGCCGCGCCATCGCGTTATCCCTATATCAAGACAAGGCGGTTTTCTCCAGAAGCACAAGGAAGCATCAAATAAATGGAATATGGCACCACCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0010997 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0040008 GO:0042176 GO:0043934 GO:0044703 GO:0044877 GO:0045732 GO:0045926 GO:0046620 GO:0046621 GO:0048229 GO:0048236 GO:0048518 GO:0048519 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051321 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

6.83

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32310
fragaria_vesca	FvH4_5g22750
malus_domestica	MD06G1038000.v1.1
prunus_persica	Prupe.5G030900_v2.0.a1
pyrus_communis	pycom06g03170
rosa_chinensis	RchiOBHm_Chr7g0211351
rosa_laevigata	RLG00000003007
rosa_multiflora	Rmu_sc0001226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247910
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh7AG257700 Rh7BG251800 Rh7CG274400 Rh7DG264100
rosa_wichuraiana	Rw7G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	2 cut(s)	253, 261
AciI	CCGC	6 cut(s)	90, 93, 96, 99, 251, 285
AcsI	RAATTY	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	146, 224
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	248
AsuII	TTCGAA	2 cut(s)	11, 243
BanI	GGYRCC	1 cut(s)	331
BccI	CCATC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BisI	GCNGC	5 cut(s)	90, 93, 96, 99, 251
BlsI	GCNGC	5 cut(s)	91, 94, 97, 100, 252
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	333
BmsI	GCATC	2 cut(s)	184, 320
BpmI	CTGGAG	1 cut(s)	278
Bpu14I	TTCGAA	2 cut(s)	11, 243
Bse118I	RCCGGY	1 cut(s)	22
BseGI	GGATG	2 cut(s)	199, 243
Bsh1236I	CGCG	2 cut(s)	253, 261
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	23, 57
BsnI	GGCC	1 cut(s)	250
Bsp119I	TTCGAA	2 cut(s)	11, 243
Bsp143I	GATC	2 cut(s)	148, 184
BspACI	CCGC	6 cut(s)	90, 93, 96, 99, 251, 285
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	253, 261
BspLI	GGNNCC	1 cut(s)	333
BspT104I	TTCGAA	2 cut(s)	11, 243
BspT107I	GGYRCC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	2 cut(s)	148, 184
Bst6I	CTCTTC	1 cut(s)	122
BstBI	TTCGAA	2 cut(s)	11, 243
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	199, 243
BstFNI	CGCG	2 cut(s)	253, 261
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	151, 187
BstMBI	GATC	2 cut(s)	148, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 98
BstUI	CGCG	2 cut(s)	253, 261
BsuRI	GGCC	1 cut(s)	250
BtgZI	GCGATG	2 cut(s)	3, 242
BtsCI	GGATG	2 cut(s)	199, 243
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	248
CviJI	RGCY	2 cut(s)	56, 250
CviKI_1	RGCY	2 cut(s)	56, 250
DpnI	GATC	2 cut(s)	150, 186
DpnII	GATC	2 cut(s)	148, 184
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	39
FaiI	YATR	4 cut(s)	176, 191, 272, 329
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
Fnu4HI	GCNGC	5 cut(s)	90, 93, 96, 99, 251
FokI	GGATG	2 cut(s)	206, 250
Fsp4HI	GCNGC	5 cut(s)	90, 93, 96, 99, 251
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	5 cut(s)	90, 93, 96, 99, 251
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	23, 57
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	23, 57
Hpy188I	TCNGA	3 cut(s)	109, 130, 184
Hpy188III	TCNNGA	3 cut(s)	146, 276, 295
Hpy99I	CGWCG	3 cut(s)	37, 46, 113
HpyAV	CCTTC	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 98
HspAI	GCGC	1 cut(s)	253
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	148, 184
LpnPI	CCDG	4 cut(s)	36, 70, 99, 308
LweI	GCATC	2 cut(s)	184, 320
MalI	GATC	2 cut(s)	150, 186
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	2 cut(s)	148, 184
MboII	GAAGA	4 cut(s)	109, 112, 236, 239
MluCI	AATT	4 cut(s)	7, 13, 76, 232
MmeI	TCCRAC	2 cut(s)	132, 153
MnlI	CCTC	3 cut(s)	125, 136, 143
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	201, 213
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	2 cut(s)	23, 57
MvnI	CGCG	2 cut(s)	253, 261
MwoI	GCNNNNNNNGC	2 cut(s)	95, 98
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	148, 184
NgoMIV	GCCGGC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	333
NspV	TTCGAA	2 cut(s)	11, 243
PcsI	WCGNNNNNNNCGW	3 cut(s)	38, 41, 47
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	91, 94, 97, 100, 252
PsiI	TTATAA	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	201, 213
SatI	GCNGC	5 cut(s)	90, 93, 96, 99, 251
Sau3AI	GATC	2 cut(s)	148, 184
Sau96I	GGNCC	1 cut(s)	248
SetI	ASST	3 cut(s)	117, 135, 210
SfaNI	GCATC	2 cut(s)	184, 320
SfuI	TTCGAA	2 cut(s)	11, 243
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	7, 13, 76, 232
SsiI	CCGC	6 cut(s)	90, 93, 96, 99, 251, 285
TaqI	TCGA	4 cut(s)	11, 35, 41, 243
TasI	AATT	4 cut(s)	7, 13, 76, 232
TauI	GCSGC	5 cut(s)	92, 95, 98, 101, 253
Tru1I	TTAA	2 cut(s)	201, 213
Tru9I	TTAA	2 cut(s)	201, 213
TspDTI	ATGAA	1 cut(s)	6
XapI	RAATTY	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.