Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

9856261 .. 9861095

Gene Structure 4835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATCCCCACACTCGCCTCGATGACGATGACGATTTCGGAGGTGACTTTCCGGGAACTAGCGGTGCCCGCCGGTCAGGTAACAAGAGAAGCTTTGGGGAGATTGAGGACGAAGATGATTTCTTTGGCTCAAAGCAGGTTAAAGCAAAAGTCGAAGAAACTGCTCCTGGTGTTGCAACAGGAATGATTTTGTCTTTGCGTGAGAGTCTCCAGACCTGTAAGGATGATCTTGCAAAGTGCCAAATGGAATATGATGCTGCAAAATCTGAGGTTCAGAAGTGGCATTCTGCATTTCAGAATGAACCCTTTATAAATCCGGGGACTTCTCCTGATCCTACATTAGTCATCAATTATCTTCAGACCCTGAAAAACTCCGAGGAGTCACTGAAAGAACAGTTGGAGAAAGCAAAGAAAAAGGAAGCTGCATTCATAGTTACATTTGCAAAACGGGAGCAGGAGGTTGCAGAGCTCAAGTCTGCAGTTCGGGATCTTAGAGCTCAACTCAAGCCACCATCATTGCAGGCAAGAAAATTGTTGCTTGATCCAGCAATTCATGAAGAATTTACTCGTCTAAAGAATTTGGTTGAGGAGAAAGAAAAAAGATTGAAGCAGTTCCAGGAAGATGTCGCTGCCAATAATTTTACTCCAACAAGCAAGATGGGGAAACAGTTAATGGCTAAATGTAAGACCCTGCAAGAGGAAAATGAGGAGATCGGCAATGAAGCATCTGAGGGAAAGATGCATGAATTATCCATGAAACTTGCTTTGCAAAAGAACCAAAATGCAGAACTTAGAAGTCAATTTGAAGCATTGCACATGCATATGGAGGGCCTCACAAATGATGTGGAAAGATCAAATGAAATGGTGGTCATCATGCAAGAGAAGCTTGAACAGAAGGATAGTGAAATCAAAAGATTAAAGGACGAGCTAGAGCAGAAGAGCGTAATGGTGGAGGAGAAAATTGATCCAGCTTCTGATAATGGAAAATTCAGCGATGAAGTGATGGTATCTGGGGAAGCCAATGGCTCAGATGATAAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

348

Amino Acids

39.35

Weight (kDa)

4.95

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Wtap	PF17098	135 - 289	2.3e-51	WTAP/Mum2p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 70
AclWI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AcsI	RAATTY	3 cut(s)	560, 577, 986
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	607, 806, 890
AjnI	CCWGG	2 cut(s)	166, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	7 cut(s)	93, 422, 469, 497, 886, 928, 971
AluI	AGCT	7 cut(s)	93, 422, 469, 497, 886, 928, 971
Alw21I	GWGCWC	2 cut(s)	471, 499
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	5 cut(s)	12, 326, 495, 536, 959
AlwNI	CAGNNNCTG	2 cut(s)	364, 974
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	3 cut(s)	257, 422, 629
ApoI	RAATTY	3 cut(s)	560, 577, 986
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	829
AsuC2I	CCSGG	2 cut(s)	54, 318
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	471, 499
Bbv12I	GWGCWC	2 cut(s)	471, 499
BbvI	GCAGC	3 cut(s)	244, 409, 616
BccI	CCATC	3 cut(s)	520, 652, 997
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	168, 617
BcnI	CCSGG	2 cut(s)	54, 318
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	60, 929
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	258, 423, 630
BlsI	GCNGC	3 cut(s)	259, 424, 631
Bme1390I	CCNGG	4 cut(s)	54, 168, 318, 617
BmgT120I	GGNCC	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	6, 67
BmrFI	CCNGG	4 cut(s)	54, 168, 318, 617
BmsI	GCATC	3 cut(s)	244, 729, 734
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	455, 488
BpuMI	CCSGG	2 cut(s)	54, 318
BsaJI	CCNNGG	2 cut(s)	317, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	3 cut(s)	515, 724, 809
BseBI	CCWGG	2 cut(s)	168, 617
BseDI	CCNNGG	2 cut(s)	317, 375
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	3 cut(s)	515, 724, 809
BseMII	CTCAG	3 cut(s)	258, 720, 1041
BseRI	GAGGAG	4 cut(s)	392, 602, 722, 968
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	244, 409, 616
BshFI	GGCC	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	471, 499
BsiSI	CCGG	3 cut(s)	53, 73, 317
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	283, 425
BsnI	GGCC	1 cut(s)	831
Bsp1286I	GDGCHC	3 cut(s)	70, 471, 499
Bsp143I	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
BspACI	CCGC	2 cut(s)	63, 70
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	3 cut(s)	259, 721, 1040
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	6, 67
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	5 cut(s)	12, 326, 495, 536, 959
BspQI	GCTCTTC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	3 cut(s)	515, 724, 809
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	317, 375
BssMI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Bst2UI	CCWGG	2 cut(s)	168, 617
Bst4CI	ACNGT	2 cut(s)	396, 669
Bst6I	CTCTTC	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	70, 522
BstDEI	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	8 cut(s)	7, 229, 334, 490, 544, 714, 854, 967
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 883
BstNI	CCWGG	2 cut(s)	168, 617
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	4 cut(s)	52, 166, 316, 615
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	244, 409, 616
BstX2I	RGATCY	2 cut(s)	4, 487
BstYI	RGATCY	2 cut(s)	4, 487
BsuRI	GGCC	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	70, 522
CaiI	CAGNNNCTG	2 cut(s)	364, 974
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	829
CspCI	CAANNNNNGTGG	4 cut(s)	498, 533, 825, 860
CviAII	CATG	5 cut(s)	554, 743, 754, 817, 874
DdeI	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
DpnI	GATC	8 cut(s)	6, 228, 333, 489, 543, 713, 853, 966
DpnII	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Eam1104I	CTCTTC	1 cut(s)	932
EarI	CTCTTC	1 cut(s)	932
Ecl136II	GAGCTC	2 cut(s)	469, 497
Eco24I	GRGCYC	2 cut(s)	471, 499
Eco53kI	GAGCTC	2 cut(s)	469, 497
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	469, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	166, 615
EcoT22I	ATGCAT	2 cut(s)	744, 822
EcoT38I	GRGCYC	2 cut(s)	471, 499
FaeI	CATG	5 cut(s)	557, 746, 757, 820, 877
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 870, 902
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	5 cut(s)	553, 742, 753, 816, 873
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	258, 423, 630
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	471, 499
Fsp4HI	GCNGC	3 cut(s)	258, 423, 630
FspBI	CTAG	2 cut(s)	60, 929
GluI	GCNGC	3 cut(s)	258, 423, 630
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	831
HapII	CCGG	3 cut(s)	53, 73, 317
Hin1II	CATG	5 cut(s)	557, 746, 757, 820, 877
HindIII	AAGCTT	2 cut(s)	91, 884
HinfI	GANTC	2 cut(s)	205, 380
HpaII	CCGG	3 cut(s)	53, 73, 317
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	9 cut(s)	41, 268, 276, 297, 360, 376, 730, 976, 1030
Hpy188III	TCNNGA	4 cut(s)	211, 329, 485, 554
HpyAV	CCTTC	1 cut(s)	889
HpyCH4III	ACNGT	2 cut(s)	396, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 883
HpyF3I	CTNAG	5 cut(s)	267, 491, 729, 791, 1027
Hsp92II	CATG	5 cut(s)	557, 746, 757, 820, 877
Kzo9I	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	2 cut(s)	169, 451
Lsp1109I	GCAGC	3 cut(s)	244, 409, 616
LweI	GCATC	3 cut(s)	244, 729, 734
MaeI	CTAG	2 cut(s)	60, 929
MaeIII	GTNAC	4 cut(s)	44, 80, 381, 433
MalI	GATC	8 cut(s)	6, 228, 333, 489, 543, 713, 853, 966
MboI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
MboII	GAAGA	6 cut(s)	125, 167, 347, 569, 632, 949
MflI	RGATCY	2 cut(s)	4, 487
MhlI	GDGCHC	3 cut(s)	70, 471, 499
MlyI	GAGTC	2 cut(s)	214, 389
MmeI	TCCRAC	2 cut(s)	378, 671
Mph1103I	ATGCAT	2 cut(s)	744, 822
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	3 cut(s)	141, 671, 917
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	3 cut(s)	53, 73, 317
MspR9I	CCNGG	4 cut(s)	54, 168, 318, 617
Mva1269I	GAATGC	2 cut(s)	283, 425
MvaI	CCWGG	2 cut(s)	168, 617
MwoI	GCNNNNNNNGC	2 cut(s)	69, 883
NciI	CCSGG	2 cut(s)	54, 318
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
NlaIII	CATG	5 cut(s)	557, 746, 757, 820, 877
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	2 cut(s)	44, 381
NsiI	ATGCAT	2 cut(s)	744, 822
NspI	RCATGY	1 cut(s)	820
PagI	TCATGA	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	932
PctI	GAATGC	2 cut(s)	283, 425
PdmI	GAANNNNTTC	1 cut(s)	611
PfoI	TCCNGGA	2 cut(s)	52, 615
PkrI	GCNGC	3 cut(s)	259, 424, 631
PleI	GAGTC	2 cut(s)	213, 388
PpsI	GAGTC	2 cut(s)	213, 388
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	2 cut(s)	471, 499
Psp6I	CCWGG	2 cut(s)	166, 615
PspGI	CCWGG	2 cut(s)	166, 615
PspN4I	GGNNCC	2 cut(s)	6, 67
PspPI	GGNCC	1 cut(s)	829
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	364, 974
PsuI	RGATCY	2 cut(s)	4, 487
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	2 cut(s)	471, 499
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	3 cut(s)	141, 671, 917
SatI	GCNGC	3 cut(s)	258, 423, 630
Sau3AI	GATC	8 cut(s)	4, 226, 331, 487, 541, 711, 851, 964
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	2 cut(s)	214, 389
ScrFI	CCNGG	4 cut(s)	54, 168, 318, 617
SduI	GDGCHC	3 cut(s)	70, 471, 499
SfaNI	GCATC	3 cut(s)	244, 729, 734
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	2 cut(s)	470, 503
SmoI	CTYRAG	2 cut(s)	470, 503
SsiI	CCGC	2 cut(s)	63, 70
SspMI	CTAG	2 cut(s)	60, 929
SstI	GAGCTC	2 cut(s)	471, 499
StyD4I	CCNGG	4 cut(s)	52, 166, 316, 615
TaaI	ACNGT	2 cut(s)	396, 669
TaqI	TCGA	2 cut(s)	21, 153
Tru1I	TTAA	3 cut(s)	141, 671, 917
Tru9I	TTAA	3 cut(s)	141, 671, 917
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	44, 381
TseI	GCWGC	3 cut(s)	257, 422, 629
Tsp45I	GTSAC	2 cut(s)	44, 381
TspDTI	ATGAA	9 cut(s)	315, 418, 542, 570, 735, 759, 770, 873, 1011
TspRI	CASTG	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	3 cut(s)	560, 577, 986
XceI	RCATGY	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	60, 929
Zsp2I	ATGCAT	2 cut(s)	744, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.