Rmu_sc0014274.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014274.1
OG0001009
Physical Location & Seq
Forward (+)
1 .. 992
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014274.1_g000001.1.cds

Sequence Viewer

Length: 596 bp
tgcaggtttcaggaagtgtgacttacaatggtcatggcatgcacgagtttgtgcctcagagaagtgctgcatatatcagtcaacatgatgttcatattggagaaatgacagttgcagaaaccttggctttttctgcaagatgccaaggggtcggacctcgttatgagatgctagcagagctaagtagaagagagaaagatgcaagtattaagccagatccagacttggatatctacatgaagggaatagcatcagaaagtaagagagcagcatttgtgacaaattatattctgaaggttttgggattggagggctgtgcaaataccttggtaggggatcaattgataaggggtatatctggaggacaaaagaagcgagtcacaactggtgagatgttagttggtcctgctaaggcactattcatggacgaaatatcgactggtttggatagttcaacaacttatcaaatagtgaattccatcaagcaatatgttcacattctccaagggactgcattcatctcactactgcagccagcacccgagacttatgatctatttgatgacattattgatagctatatttcacaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

197

Amino Acids

21.54

Weight (kDa)

5.33

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 211, 344
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 455
AluBI AGCT 2 cut(s) 180, 578
AluI AGCT 2 cut(s) 180, 578
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 2 cut(s) 211, 344
Ama87I CYCGRG 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 67, 268, 531
ApoI RAATTY 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 154, 403
AsuHPI GGTGA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 2 cut(s) 154, 403
BauI CACGAG 1 cut(s) 43
BbvI GCAGC 3 cut(s) 54, 280, 543
BccI CCATC 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 529
BisI GCNGC 3 cut(s) 68, 269, 532
BlsI GCNGC 3 cut(s) 69, 270, 533
Bme18I GGWCC 2 cut(s) 154, 403
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 154, 403
BmsI GCATC 4 cut(s) 130, 158, 189, 259
BmtI GCTAGC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 410
BsaJI CCNNGG 4 cut(s) 122, 144, 326, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 390, 444
BseDI CCNNGG 4 cut(s) 122, 144, 326, 504
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 390, 444
BseXI GCAGC 3 cut(s) 54, 280, 543
BsiHKCI CYCGRG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 522
BsmI GAATGC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 541
Bsp143I GATC 3 cut(s) 216, 336, 552
BspCNI CTCAG 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 533
BspOI GCTAGC 1 cut(s) 175
BspPI GGATC 2 cut(s) 211, 344
BsrI ACTGG 2 cut(s) 390, 444
BssECI CCNNGG 4 cut(s) 122, 144, 326, 504
BssMI GATC 3 cut(s) 216, 336, 552
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 4 cut(s) 122, 144, 326, 504
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 40, 173, 536
BstDEI CTNAG 3 cut(s) 56, 181, 410
BstKTI GATC 3 cut(s) 219, 339, 555
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 3 cut(s) 216, 336, 552
BstMWI GCNNNNNNNGC 2 cut(s) 133, 177
BstNSI RCATGY 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 529
BstV1I GCAGC 3 cut(s) 54, 280, 543
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 40, 173, 536
Cfr13I GGNCC 2 cut(s) 154, 403
CviAII CATG 5 cut(s) 34, 39, 85, 237, 423
CviJI RGCY 6 cut(s) 127, 180, 213, 314, 534, 578
CviKI_1 RGCY 6 cut(s) 127, 180, 213, 314, 534, 578
DdeI CTNAG 3 cut(s) 56, 181, 410
DpnI GATC 3 cut(s) 218, 338, 554
DpnII GATC 3 cut(s) 216, 336, 552
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 4 cut(s) 122, 144, 326, 504
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 154, 403
Eco57I CTGAAG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 541
EcoRI GAATTC 1 cut(s) 474
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 4 cut(s) 122, 144, 326, 504
ErhI CCWWGG 4 cut(s) 122, 144, 326, 504
FaeI CATG 5 cut(s) 37, 42, 88, 240, 426
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 33, 38, 84, 236, 422
Fnu4HI GCNGC 3 cut(s) 68, 269, 532
Fsp4HI GCNGC 3 cut(s) 68, 269, 532
FspBI CTAG 1 cut(s) 172
GluI GCNGC 3 cut(s) 68, 269, 532
GsuI CTGGAG 1 cut(s) 380
Hin1II CATG 5 cut(s) 37, 42, 88, 240, 426
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 82, 495
Hpy188I TCNGA 4 cut(s) 59, 154, 255, 293
Hpy188III TCNNGA 3 cut(s) 11, 220, 359
Hpy8I GTNNAC 2 cut(s) 82, 495
HpyAV CCTTC 2 cut(s) 234, 288
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 9 cut(s) 3, 42, 70, 115, 136, 202, 319, 514, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 177
HpyF3I CTNAG 3 cut(s) 56, 181, 410
Hsp92II CATG 5 cut(s) 37, 42, 88, 240, 426
Kzo9I GATC 3 cut(s) 216, 336, 552
LpnPI CCDG 7 cut(s) 227, 233, 344, 371, 419, 425, 548
Lsp1109I GCAGC 3 cut(s) 54, 280, 543
LweI GCATC 4 cut(s) 130, 158, 189, 259
MaeI CTAG 1 cut(s) 172
MaeIII GTNAC 3 cut(s) 18, 276, 378
MalI GATC 3 cut(s) 218, 338, 554
MboI GATC 3 cut(s) 216, 336, 552
MboII GAAGA 1 cut(s) 200
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 216
MluCI AATT 3 cut(s) 282, 340, 474
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 65, 167, 303, 355
MseI TTAA 1 cut(s) 209
MunI CAATTG 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 514
MwoI GCNNNNNNNGC 2 cut(s) 133, 177
NdeII GATC 3 cut(s) 216, 336, 552
NheI GCTAGC 1 cut(s) 171
NlaIII CATG 5 cut(s) 37, 42, 88, 240, 426
NmuCI GTSAC 3 cut(s) 18, 276, 378
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PctI GAATGC 1 cut(s) 514
PkrI GCNGC 3 cut(s) 69, 270, 533
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PspPI GGNCC 2 cut(s) 154, 403
PstI CTGCAG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 216
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 68, 269, 532
Sau3AI GATC 3 cut(s) 216, 336, 552
Sau96I GGNCC 2 cut(s) 154, 403
SchI GAGTC 1 cut(s) 386
SetI ASST 7 cut(s) 8, 124, 159, 182, 299, 328, 580
SfaNI GCATC 4 cut(s) 130, 158, 189, 259
SfcI CTRYAG 1 cut(s) 529
SinI GGWCC 2 cut(s) 154, 403
SphI GCATGC 1 cut(s) 42
Sse9I AATT 3 cut(s) 282, 340, 474
SspMI CTAG 1 cut(s) 172
StyI CCWWGG 4 cut(s) 122, 144, 326, 504
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 436
TasI AATT 3 cut(s) 282, 340, 474
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 3 cut(s) 18, 276, 378
TseI GCWGC 3 cut(s) 67, 268, 531
Tsp45I GTSAC 3 cut(s) 18, 276, 378
TspDTI ATGAA 4 cut(s) 82, 253, 411, 507
VpaK11BI GGWCC 2 cut(s) 154, 403
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 42
XspI CTAG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.