Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

7842489 .. 7842842

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGCTTGGAATCGTTTGTGAGAAGGATAAGCAGAGGAGTGGTGGTGGAATGCCGGTGGGGCCGCAGGATCTCCCTCATCTTTGGGCATCGACGAAAGGAGATTTGGGGCTGGCTGGGTGGGCGGTTTGGACTGCACGGGTGCGATCTGTTTTGATTGCAGATCGATTTGGCGATGGCCAGTGGAAGGGCGGTGGCTGGTGGGTGTCGTCAGTTTTGGGCCACCTCAGATTTGCTTTTGGGTGGTCAAGTGATGTCGGGTTTTGGCAGCCAGGGAGTGGGAGTGACGAGGATTCTGGTAGAGGTGCGACGGTGAGCTTTCCCGGCGATGGGCGACTGCGTGCGGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.42

Weight (kDa)

7.96

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	4 cut(s)	65, 125, 192, 344
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	178
AfiI	CCNNNNNNNGG	4 cut(s)	187, 278, 329, 330
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	4 cut(s)	62, 178, 220, 346
ApeKI	GCWGC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	62, 220, 346
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	170, 323
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	65, 269
BlsI	GCNGC	2 cut(s)	66, 270
Bme1390I	CCNGG	2 cut(s)	273, 324
BmgT120I	GGNCC	3 cut(s)	62, 220, 346
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	273, 324
BmsI	GCATC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 268, 298
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 278, 329, 330
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	4 cut(s)	187, 278, 329, 330
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	64, 180, 222, 348
BshVI	ATCGAT	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	56, 324
BslI	CCNNNNNNNGG	4 cut(s)	187, 278, 329, 330
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	64, 180, 222, 348
Bsp143I	GATC	3 cut(s)	70, 146, 163
BspACI	CCGC	4 cut(s)	65, 125, 192, 344
BspANI	GGCC	4 cut(s)	64, 180, 222, 348
BspCNI	CTCAG	1 cut(s)	240
BspDI	ATCGAT	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	70, 146, 163
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	114, 342, 346
BstDEI	CTNAG	1 cut(s)	227
BstKTI	GATC	3 cut(s)	73, 149, 166
BstMBI	GATC	3 cut(s)	70, 146, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 122, 324
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	271, 322
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	64, 180, 222, 348
BsuTUI	ATCGAT	1 cut(s)	166
BtgZI	GCGATG	2 cut(s)	189, 342
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	114, 342, 346
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	62, 220, 346
ClaI	ATCGAT	1 cut(s)	166
CviJI	RGCY	9 cut(s)	64, 112, 116, 180, 198, 222, 271, 318, 348
CviKI_1	RGCY	9 cut(s)	64, 112, 116, 180, 198, 222, 271, 318, 348
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	3 cut(s)	72, 148, 165
DpnII	GATC	3 cut(s)	70, 146, 163
EaeI	YGGCCR	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	271
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	65, 269
Fsp4HI	GCNGC	2 cut(s)	65, 269
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	2 cut(s)	65, 269
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	64, 180, 222, 348
HapII	CCGG	2 cut(s)	56, 324
HinfI	GANTC	2 cut(s)	12, 293
HpaII	CCGG	2 cut(s)	56, 324
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	230
Hpy99I	CGWCG	2 cut(s)	97, 313
HpyAV	CCTTC	2 cut(s)	19, 181
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	137, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 122, 324
HpyF3I	CTNAG	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	70, 146, 163
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	72, 148, 165
MboI	GATC	3 cut(s)	70, 146, 163
MflI	RGATCY	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MnlI	CCTC	5 cut(s)	30, 87, 236, 283, 296
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	2 cut(s)	56, 324
MspR9I	CCNGG	2 cut(s)	273, 324
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	61, 122, 324
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	3 cut(s)	70, 146, 163
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	12, 293
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	66, 270
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	62, 220, 346
PsuI	RGATCY	1 cut(s)	70
SatI	GCNGC	2 cut(s)	65, 269
Sau3AI	GATC	3 cut(s)	70, 146, 163
Sau96I	GGNCC	3 cut(s)	62, 220, 346
ScrFI	CCNGG	2 cut(s)	273, 324
SetI	ASST	3 cut(s)	228, 307, 320
SfaNI	GCATC	1 cut(s)	98
SsiI	CCGC	4 cut(s)	65, 125, 192, 344
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	271, 322
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	92, 166
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	12, 293
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	284
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	278
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.