Rroxscaffold_1G00070230

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001009
Physical Location & Seq
Forward (+)
91078415 .. 91080635
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070230.1

Sequence Viewer

Length: 531 bp
ATGCTAGCTCATGCATATTCCACAATTAAGGTGTCACCTACTTTGGAGAGTAGATTTAGTAAGGACAATGAGAAGCAAACTTGGTGCTATGAGAATGATGCGTCAAGAGAAGGTACCATTTATGGTGGAGAATTCGTTCAAGGGGATGTTGCTCGAAGTGAGTTGTGCAAACCATTAAAGATCGCTCCTATTAGGTTTGGCAACTTTGATGGAGACTTGGATTGCATGCAAGTGGTTGCACGTGAGAATGATCCATCTATTGGGATATATGCAGTGGAAGGTGGACGGGCAACAGATATGCCAACACAACTGATCATTTGGATTAATCGATCAACTCCCTTCTGGAGAAGTGGGCCATGGGATAAGTCAAAGTTCATCGGCGTGCCAGGTGAAGGAAAGCCAATTAAGTTGATTGCCAGCCTTACAGCTATTGGTATAATGATTATCATGGTTGCCATAGTGTTCGGTTTGCACAGGTCGCGAGCTAACCAAAAGGGTAAAAACTGCAATAAAGGAGATCAATTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.53

Weight (kDa)

8.68

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 1 cut(s) 481
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 131
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 260, 392
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 385
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 3 cut(s) 8, 428, 485
AluI AGCT 3 cut(s) 8, 428, 485
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 27, 401
AsuNHI GCTAGC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 242
BccI CCATC 2 cut(s) 203, 262
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 364
Bsa29I ATCGAT 1 cut(s) 328
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 392
BseBI CCWGG 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 260, 392
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 260, 392
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 5 cut(s) 180, 250, 312, 329, 517
Bsp19I CCATGG 1 cut(s) 356
Bsp68I TCGCGA 1 cut(s) 481
BspANI GGCC 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 328
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 5 cut(s) 180, 250, 312, 329, 517
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 5 cut(s) 6, 227, 383, 418, 483
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 481
BstKTI GATC 5 cut(s) 183, 253, 315, 332, 520
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 5 cut(s) 180, 250, 312, 329, 517
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 385
BstUI CGCG 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 328
BsuRI GGCC 1 cut(s) 355
BsuTUI ATCGAT 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
BtuMI TCGCGA 1 cut(s) 481
Cac8I GCNNGC 5 cut(s) 6, 227, 383, 418, 483
Cfr13I GGNCC 1 cut(s) 353
ClaI ATCGAT 1 cut(s) 328
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 114
CviAII CATG 4 cut(s) 11, 226, 357, 448
CviJI RGCY 6 cut(s) 8, 355, 400, 420, 428, 485
CviKI_1 RGCY 6 cut(s) 8, 355, 400, 420, 428, 485
CviQI GTAC 1 cut(s) 114
DpnI GATC 5 cut(s) 182, 252, 314, 331, 519
DpnII GATC 5 cut(s) 180, 250, 312, 329, 517
Eco130I CCWWGG 1 cut(s) 356
Eco72I CACGTG 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 14, 229, 360, 451
FatI CATG 4 cut(s) 10, 225, 356, 447
FbaI TGATCA 1 cut(s) 312
FokI GGATG 1 cut(s) 158
FspBI CTAG 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 1 cut(s) 355
HgaI GACGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 14, 229, 360, 451
HphI GGTGA 2 cut(s) 27, 401
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 3 cut(s) 105, 343, 480
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 4 cut(s) 104, 272, 349, 386
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 8 cut(s) 14, 168, 225, 229, 239, 272, 472, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 4 cut(s) 14, 229, 360, 451
KpnI GGTACC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 5 cut(s) 180, 250, 312, 329, 517
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 328, 372, 399, 430, 460
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 33
MalI GATC 5 cut(s) 182, 252, 314, 331, 519
MboI GATC 5 cut(s) 180, 250, 312, 329, 517
MluCI AATT 4 cut(s) 24, 131, 402, 521
Mph1103I ATGCAT 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 4 cut(s) 27, 176, 324, 405
MslI CAYNNNNRTG 2 cut(s) 230, 380
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 478
NcoI CCATGG 1 cut(s) 356
NdeII GATC 5 cut(s) 180, 250, 312, 329, 517
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 14, 229, 360, 451
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 33
NruI TCGCGA 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 260
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 385
PspCI CACGTG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 353
RruI TCGCGA 1 cut(s) 481
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 2 cut(s) 230, 380
SaqAI TTAA 4 cut(s) 27, 176, 324, 405
Sau3AI GATC 5 cut(s) 180, 250, 312, 329, 517
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 387
SfaNI GCATC 1 cut(s) 88
SmiMI CAYNNNNRTG 2 cut(s) 230, 380
SphI GCATGC 1 cut(s) 229
Sse9I AATT 4 cut(s) 24, 131, 402, 521
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 1 cut(s) 356
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 154, 328
TasI AATT 4 cut(s) 24, 131, 402, 521
Tru1I TTAA 4 cut(s) 27, 176, 324, 405
Tru9I TTAA 4 cut(s) 27, 176, 324, 405
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 260
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.