Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

24362524 .. 24363740

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGAAGCCGCTGGTGTGGTCAACGATGGTGGTCTGGATGCATGTGGCGGCGGGGTTGCTTGCTTTCTGGGTTACTTTGCTTGTAGCTCTGGCTTGGCTGTTCGGAGTTGCTTTTTTGGCTGCTCAGAATCTCAGGTTTGGCGGTTTGGAGGTAGTTGGTATAGTGGCTGTACTGGGTACGGATGACGTATGCATTCGGCAACGGTCGACGGCAGCAAGGGGTTCCTGTGCTGCTGGACCCAACTCAGCCCATATGTTGGGTTCACCTTCTCCTATGGGTTGGCTTTGGGATCCAGAAGACATTGCGGCTGCTGACCCAGTCTCTGCTCTTCACCCTCAAAACATTACATCAGGCATAATTTCCAAAACAGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.27

Weight (kDa)

5.8

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	5 cut(s)	11, 50, 53, 144, 308
AclWI	GGATC	2 cut(s)	287, 300
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	174, 181
AfiI	CCNNNNNNNGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	89, 374
AluI	AGCT	2 cut(s)	89, 374
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	287, 300
AlwNI	CAGNNNCTG	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	122, 215, 233, 311
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	258, 326
AvaII	GGWCC	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	109, 220, 227, 298
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	328
BisI	GCNGC	7 cut(s)	11, 51, 123, 216, 234, 309, 312
BlsI	GCNGC	7 cut(s)	12, 52, 124, 217, 235, 310, 313
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	3 cut(s)	226, 241, 294
BmrI	ACTGGG	2 cut(s)	185, 314
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	2 cut(s)	185, 314
BpiI	GAAGAC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	180, 320
Bse3DI	GCAATG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	45, 190
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	140, 148, 261
BseNI	ACTGG	2 cut(s)	180, 320
BseXI	GCAGC	4 cut(s)	109, 220, 227, 298
Bsh1285I	CGRYCG	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	5 cut(s)	11, 50, 53, 144, 308
BspCNI	CTCAG	3 cut(s)	139, 147, 260
BspLI	GGNNCC	3 cut(s)	226, 241, 294
BspPI	GGATC	2 cut(s)	287, 300
BspQI	GCTCTTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	180, 320
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	126, 134, 247
BstF5I	GGATG	2 cut(s)	45, 190
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	292
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 119
BstNSI	RCATGY	1 cut(s)	47
BstV1I	GCAGC	4 cut(s)	109, 220, 227, 298
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	45, 190
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	173, 180
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	2 cut(s)	173, 180
DdeI	CTNAG	3 cut(s)	126, 134, 247
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	45, 197
FaeI	CATG	1 cut(s)	47
FaiI	YATR	7 cut(s)	45, 164, 193, 255, 257, 278, 359
FatI	CATG	1 cut(s)	43
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	7 cut(s)	11, 51, 123, 216, 234, 309, 312
FokI	GGATG	2 cut(s)	52, 197
Fsp4HI	GCNGC	7 cut(s)	11, 51, 123, 216, 234, 309, 312
GluI	GCNGC	7 cut(s)	11, 51, 123, 216, 234, 309, 312
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	24, 210
HindII	GTYRAC	2 cut(s)	24, 210
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	2 cut(s)	258, 326
Hpy166II	GTNNAC	3 cut(s)	24, 210, 266
Hpy188I	TCNGA	2 cut(s)	107, 129
Hpy188III	TCNNGA	2 cut(s)	37, 296
Hpy8I	GTNNAC	3 cut(s)	24, 210, 266
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	43, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 119
HpyF3I	CTNAG	3 cut(s)	126, 134, 247
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	336
Lsp1109I	GCAGC	4 cut(s)	109, 220, 227, 298
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	311, 323
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	360
MnlI	CCTC	2 cut(s)	145, 348
Mph1103I	ATGCAT	2 cut(s)	45, 197
MseI	TTAA	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	13, 374
Mva1269I	GAATGC	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	10, 119
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	3 cut(s)	226, 241, 294
NsiI	ATGCAT	2 cut(s)	45, 197
NspI	RCATGY	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	12, 52, 124, 217, 235, 310, 313
PspN4I	GGNNCC	3 cut(s)	226, 241, 294
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	174, 181
RsaNI	GTAC	2 cut(s)	173, 180
SalI	GTCGAC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	7 cut(s)	11, 51, 123, 216, 234, 309, 312
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	239
SetI	ASST	6 cut(s)	91, 140, 156, 192, 271, 376
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	5 cut(s)	11, 50, 53, 144, 308
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	360
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	3 cut(s)	13, 53, 311
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseI	GCWGC	4 cut(s)	122, 215, 233, 311
TspGWI	ACGGA	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	239
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	209
Zsp2I	ATGCAT	2 cut(s)	45, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.