Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002302.1

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

67223 .. 69840

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002302.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtcaggtagcacaacatacaatggccatggcttaaacgagtttgtgccgcagaggacgtcggcttatgtcagtcaacaggactggtttgcggtggagatgactgtaagggagactcttgactttgcaggacggtgtcaaggtgttggattcaaatatgatatgctagtagaactagcaagaagagaaaagattgcggggataaaacccgatggtgatcttgatatattcatgaaggaagagctagatgatatcattcgatacggatcaaaggagttatttactgatgaaaatgatgaagcgggaaaatcccgtcaaattcattatgatgatgctgcgatagagagagtacttgatcgtgaacaagctggggatgatgacactccgttggaggaaggagatgaagatggatttttaaaggcctttaaggttgcaaattttgaatacattgacgaagcagagggcgtagaagaggaggaaccaaaaaaggctgcagttgacagtagtcctactgacaatgataaatcaaatttctgggaagatttgttaaaggacagatatgaagtgcataaagttgaagaattaaacgctttaggcaaagggaagagaagtcgtaagcagatggtatctgttgaagacgatgatctcagaggaaccaacaaaggctgcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

224

Amino Acids

25.41

Weight (kDa)

4.46

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	50, 92, 197, 302
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	3 cut(s)	318, 436, 529
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	4 cut(s)	154, 443, 578, 635
AluBI	AGCT	2 cut(s)	244, 368
AluI	AGCT	2 cut(s)	244, 368
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	2 cut(s)	25, 420
ApeKI	GCWGC	3 cut(s)	335, 491, 666
ApoI	RAATTY	3 cut(s)	318, 436, 529
AsuHPI	GGTGA	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	322, 478, 653
BccI	CCATC	3 cut(s)	206, 401, 616
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	167, 176, 245
BfmI	CTRYAG	2 cut(s)	492, 667
BisI	GCNGC	4 cut(s)	50, 336, 492, 667
BlsI	GCNGC	4 cut(s)	51, 337, 493, 668
BmcAI	AGTACT	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	480, 655
BmsI	GCATC	1 cut(s)	322
BoxI	GACNNNNGTC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	642
BsaBI	GATNNNNATC	2 cut(s)	216, 265
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	89
Bse8I	GATNNNNATC	2 cut(s)	216, 265
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	2 cut(s)	216, 265
BseMII	CTCAG	1 cut(s)	661
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	322, 478, 653
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	2 cut(s)	27, 422
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	27, 422
Bsp143I	GATC	4 cut(s)	217, 266, 355, 643
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	4 cut(s)	50, 92, 197, 302
BspANI	GGCC	2 cut(s)	27, 422
BspCNI	CTCAG	1 cut(s)	660
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	480, 655
BspMAI	CTGCAG	2 cut(s)	496, 671
BspPI	GGATC	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	217, 266, 355, 643
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	3 cut(s)	106, 135, 503
Bst6I	CTCTTC	4 cut(s)	178, 234, 465, 599
BstACI	GRCGYC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	647
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	4 cut(s)	220, 269, 358, 646
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	4 cut(s)	217, 266, 355, 643
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	492, 667
BstV1I	GCAGC	3 cut(s)	322, 478, 653
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	27, 422
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	29, 232
CviJI	RGCY	8 cut(s)	27, 33, 65, 244, 368, 422, 491, 666
CviKI_1	RGCY	8 cut(s)	27, 33, 65, 244, 368, 422, 491, 666
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	4 cut(s)	219, 268, 357, 645
DpnII	GATC	4 cut(s)	217, 266, 355, 643
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	4 cut(s)	178, 234, 465, 599
EarI	CTCTTC	4 cut(s)	178, 234, 465, 599
Eco130I	CCWWGG	1 cut(s)	28
Eco147I	AGGCCT	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	32, 235
FatI	CATG	2 cut(s)	28, 231
FauI	CCCGC	2 cut(s)	190, 295
Fnu4HI	GCNGC	4 cut(s)	50, 336, 492, 667
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	50, 336, 492, 667
FspBI	CTAG	3 cut(s)	167, 176, 245
GluI	GCNGC	4 cut(s)	50, 336, 492, 667
GsaI	CCCAGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	27, 422
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	32, 235
HincII	GTYRAC	2 cut(s)	77, 499
HindII	GTYRAC	2 cut(s)	77, 499
HinfI	GANTC	2 cut(s)	115, 150
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	77, 362, 499
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	4 cut(s)	119, 221, 232, 359
Hpy8I	GTNNAC	3 cut(s)	77, 362, 499
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	229, 389
HpyCH4III	ACNGT	3 cut(s)	106, 135, 503
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	128, 434, 494, 568, 669
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	32, 235
Kzo9I	GATC	4 cut(s)	217, 266, 355, 643
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	5 cut(s)	65, 70, 114, 354, 520
Lsp1109I	GCAGC	3 cut(s)	322, 478, 653
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	3 cut(s)	167, 176, 245
MaeII	ACGT	1 cut(s)	59
MalI	GATC	4 cut(s)	219, 268, 357, 645
MboI	GATC	4 cut(s)	217, 266, 355, 643
MboII	GAAGA	8 cut(s)	195, 251, 416, 482, 551, 590, 616, 647
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	4 cut(s)	318, 436, 529, 581
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	127, 369
MnlI	CCTC	6 cut(s)	48, 385, 454, 466, 469, 644
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	5 cut(s)	35, 416, 426, 548, 584
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	217, 266, 355, 643
NlaIII	CATG	2 cut(s)	32, 235
NlaIV	GGNNCC	2 cut(s)	480, 655
PagI	TCATGA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	51, 337, 493, 668
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshAI	GACNNNNGTC	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	480, 655
PstI	CTGCAG	2 cut(s)	496, 671
PsyI	GACNNNGTC	1 cut(s)	135
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	35, 416, 426, 548, 584
SatI	GCNGC	4 cut(s)	50, 336, 492, 667
Sau3AI	GATC	4 cut(s)	217, 266, 355, 643
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	1 cut(s)	109
SetI	ASST	6 cut(s)	10, 62, 145, 246, 370, 432
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	492, 667
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	4 cut(s)	318, 436, 529, 581
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	4 cut(s)	50, 92, 197, 302
SspMI	CTAG	3 cut(s)	167, 176, 245
StuI	AGGCCT	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	3 cut(s)	106, 135, 503
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	259
TasI	AATT	4 cut(s)	318, 436, 529, 581
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	5 cut(s)	35, 416, 426, 548, 584
Tru9I	TTAA	5 cut(s)	35, 416, 426, 548, 584
TseI	GCWGC	3 cut(s)	335, 491, 666
TspDTI	ATGAA	7 cut(s)	220, 248, 303, 311, 312, 417, 576
TspGWI	ACGGA	2 cut(s)	279, 375
Tth111I	GACNNNGTC	1 cut(s)	135
XapI	RAATTY	3 cut(s)	318, 436, 529
XspI	CTAG	3 cut(s)	167, 176, 245
ZraI	GACGTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.