Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

66298671 .. 66301472

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCAGTCAACAGGACTGGTTTGCGGTGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTATATCATGAAGATTTTAGGGTTAGACATATGCGCTGAGACAGGATATTCTTTTGAGTTTTCTGATGCAAGCTTTCTCTGTCTTAGACACAATGGGATGGGTCTTTACCGAGCTTATTCAGCAGATGCAAGTAAAAGGTGCGCAGGAATTATGTTTGCTCTTGTTGTGAGATTGGAGTTTCCAGTGCTCTATCCTGGATATAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

162

Amino Acids

18.15

Weight (kDa)

5.42

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	421
AciI	CCGC	3 cut(s)	50, 92, 197
AcoI	YGGCCR	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	3 cut(s)	245, 351, 392
AluI	AGCT	3 cut(s)	245, 351, 392
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	3 cut(s)	107, 254, 311
AoxI	GGCC	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	314, 422
AsuHPI	GGTGA	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	2 cut(s)	206, 370
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	107, 254, 311
BfaI	CTAG	2 cut(s)	167, 176
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	334, 394
BsaBI	GATNNNNATC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	89, 461
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	89, 461
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	468
BsmAI	GTCTC	3 cut(s)	107, 254, 311
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	50, 92, 197
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	2 cut(s)	231, 285
BsrI	ACTGG	2 cut(s)	89, 461
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	106, 135
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	315, 362, 486
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	314, 422
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	3 cut(s)	107, 254, 311
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	2 cut(s)	231, 285
CfoI	GCGC	2 cut(s)	314, 422
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	3 cut(s)	29, 232, 286
CviJI	RGCY	7 cut(s)	27, 33, 65, 245, 267, 351, 392
CviKI_1	RGCY	7 cut(s)	27, 33, 65, 245, 267, 351, 392
DdeI	CTNAG	3 cut(s)	315, 362, 486
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	32, 235, 289
FatI	CATG	3 cut(s)	28, 231, 285
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	167, 176
FspI	TGCGCA	1 cut(s)	421
GlaI	GCGC	2 cut(s)	313, 421
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	314, 422
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	32, 235, 289
Hin6I	GCGC	2 cut(s)	312, 420
HinP1I	GCGC	2 cut(s)	312, 420
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	2 cut(s)	115, 150
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	119, 221, 232, 286
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	106, 135
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	128, 347, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	315, 362, 486
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	32, 235, 289
HspAI	GCGC	2 cut(s)	312, 420
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	65, 70, 114, 306, 408, 459, 474
LweI	GCATC	2 cut(s)	334, 394
MaeI	CTAG	2 cut(s)	167, 176
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	195, 301
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	1 cut(s)	426
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	32, 235, 289
NsbI	TGCGCA	1 cut(s)	421
PagI	TCATGA	2 cut(s)	231, 285
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PsyI	GACNNNGTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	7 cut(s)	10, 62, 145, 247, 353, 394, 419
SfaNI	GCATC	2 cut(s)	334, 394
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	3 cut(s)	50, 92, 197
SspMI	CTAG	2 cut(s)	167, 176
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	106, 135
TaiI	ACGT	1 cut(s)	62
TasI	AATT	1 cut(s)	426
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	220, 248, 302
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	167, 176
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.