Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

61723943 .. 61725870

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCGACGAGGAGAGCACCAACCTCCTCACAAGGTTCTTTTCTATACCTTCCGAAAAAGGACTTCTTGCCTTACGGGATGGCTTTGCTTTTAGGACCCCCAAGTTCTGGTAAATCCACTTTGATCATGACTCTTGCAGGAAAACTAGACTGCAACTTAAAGGCACCCTTTCTCAATTTGTCATCGATGATTTCAGGACTGAATGCATGTTTCGTTAGAATAGTGGTAGCATTACATACAAATGATACAATGGCCCTAAGCTTGATGAGTTCTGCGTTCAAAGAACGTCAAAGCCAAACAGATAATCACATTGCAGAACTCACCGTAAGAGAACTCACCGCACGCTGCAAAACCGTCGCTGGTGATGCCTTCATGAATGCATCAATTTCTGGATCTGGCCTTGTGTTTTTTCCCTCCTCTAACTTGACCAGGTCTTTCATGTACGCTTTTTGCTTGTATCTTGGTCTTGATGTTTGTTCAGAGAGAATTGTTGGAAACAACATGGAGTACCTTTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

173

Amino Acids

18.92

Weight (kDa)

8.64

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	2 cut(s)	443, 509
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	252, 397
ApeKI	GCWGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	95, 253
AsuHPI	GGTGA	3 cut(s)	313, 328, 374
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 253
BmiI	GGNNCC	2 cut(s)	97, 165
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	2 cut(s)	355, 389
Bpu10I	CCTNAGC	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	185
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	309
BseRI	GAGGAG	3 cut(s)	16, 25, 406
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	254, 399
BshNI	GGYRCC	1 cut(s)	163
BshVI	ATCGAT	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmI	GAATGC	2 cut(s)	208, 382
BsnI	GGCC	2 cut(s)	254, 399
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	123, 392
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	2 cut(s)	254, 399
BspDI	ATCGAT	1 cut(s)	185
BspHI	TCATGA	2 cut(s)	126, 372
BspLI	GGNNCC	2 cut(s)	97, 165
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	309
BssMI	GATC	2 cut(s)	123, 392
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	325, 355
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	126, 395
BstMBI	GATC	2 cut(s)	123, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	254, 399
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	2 cut(s)	126, 372
Cfr13I	GGNCC	2 cut(s)	95, 253
ClaI	ATCGAT	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	442, 508
CviAII	CATG	5 cut(s)	127, 207, 373, 439, 502
CviJI	RGCY	5 cut(s)	83, 254, 261, 294, 399
CviKI_1	RGCY	5 cut(s)	83, 254, 261, 294, 399
CviQI	GTAC	2 cut(s)	442, 508
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	125, 394
DpnII	GATC	2 cut(s)	123, 392
Eco47I	GGWCC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	428
EcoT22I	ATGCAT	2 cut(s)	208, 382
FaeI	CATG	5 cut(s)	130, 210, 376, 442, 505
FaiI	YATR	7 cut(s)	46, 128, 208, 237, 374, 440, 503
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 152, 184
FatI	CATG	5 cut(s)	126, 206, 372, 438, 501
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	254, 399
Hin1II	CATG	5 cut(s)	130, 210, 376, 442, 505
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	3 cut(s)	313, 328, 374
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	54, 481
Hpy188III	TCNNGA	5 cut(s)	127, 195, 373, 390, 467
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	10, 359
HpyAV	CCTTC	2 cut(s)	59, 379
HpyCH4III	ACNGT	2 cut(s)	325, 355
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	6 cut(s)	137, 153, 206, 314, 348, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	130, 210, 376, 442, 505
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 392
LpnPI	CCDG	8 cut(s)	93, 123, 180, 345, 375, 381, 415, 442
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	355, 389
MabI	ACCWGGT	1 cut(s)	428
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	286
MalI	GATC	2 cut(s)	125, 394
MboI	GATC	2 cut(s)	123, 392
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	3 cut(s)	175, 384, 486
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	5 cut(s)	3, 34, 37, 424, 427
Mph1103I	ATGCAT	2 cut(s)	208, 382
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	2 cut(s)	208, 382
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	2 cut(s)	123, 392
NlaIII	CATG	5 cut(s)	130, 210, 376, 442, 505
NlaIV	GGNNCC	2 cut(s)	97, 165
NsiI	ATGCAT	2 cut(s)	208, 382
NspI	RCATGY	1 cut(s)	210
PagI	TCATGA	2 cut(s)	126, 372
PctI	GAATGC	2 cut(s)	208, 382
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	97, 165
PspPI	GGNCC	2 cut(s)	95, 253
PspPPI	RGGWCCY	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	430
RsaI	GTAC	2 cut(s)	443, 509
RsaNI	GTAC	2 cut(s)	442, 508
RseI	CAYNNNNRTG	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	2 cut(s)	123, 392
Sau96I	GGNCC	2 cut(s)	95, 253
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	7 cut(s)	26, 37, 51, 263, 289, 434, 513
SexAI	ACCWGGT	1 cut(s)	428
SfaNI	GCATC	2 cut(s)	355, 389
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	175, 384, 486
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	325, 355
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	5, 185
TasI	AATT	3 cut(s)	175, 384, 486
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	361, 389, 427
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	2 cut(s)	208, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.