RLG00000018824

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001009
Physical Location & Seq
Reverse (-)
37104799 .. 37108315
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018824

Sequence Viewer

Length: 630 bp
ATGGTCAAATTGCAATTGGAAGTGGGAGAGACCATGGTTGAGAGGAGAAGCGAGACAGAGAGGACGAGGAGGAGACCTCAGTGTTTCGGACCTCGACACCACCACCGTTGCGAGCCCGATCTATCGGATCCAACCTTCGTCACTCCTTATTGCTTATTGGTTCTATCGAGGGATCGAAGGATCGAGGGATGCTTAAGGATGAACACGAACAAAGCCTACCGCTCCCCGACTTGCTCGACCACGGCTGTATCGCTGATACCTGCACCTACCGGCCTCAGGGATAGAGATCAAGCCCTCAAGCTGCTGCACTCCCGTTGTCGACCGCCCGAAAGCCTCCGGGATCCAACCACCCAACCAATAGCACGCCGACAAGAAGCACCACCTCCCCCAAAACACCTTCTCCCCGCATGGTTCCAAAGCACCCATATCAGATCGGAGAACTTCGATCCAAAAGAGCCCGTCGAAACCCCACCTCACACTATCCCACCAGTCGCCTTCGATCAAGGGACAGAATGTTGGTACCACCAGACTGCTCTCGCCAGAGCCTCTAAGCGATTAGAAGATGCAGGACCACCACAAGGCTTGCAAGCTCGTCAAGGTTCAAGCCACGCCGCCACAGCAACAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.61

Weight (kDa)

9.27

Isoelectric Point (pI)

77.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 519
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 319
AciI CCGC 4 cut(s) 220, 323, 405, 612
AclWI GGATC 7 cut(s) 122, 135, 180, 188, 335, 348, 440
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 276, 578
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 603
AluBI AGCT 2 cut(s) 301, 590
AluI AGCT 2 cut(s) 301, 590
Alw26I GTCTC 3 cut(s) 23, 47, 67
AlwI GGATC 7 cut(s) 122, 135, 180, 188, 335, 348, 440
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 301, 304
Asp718I GGTACC 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 89, 569
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 89, 569
AxyI CCTNAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BamHI GGATCC 2 cut(s) 127, 340
BanI GGYRCC 1 cut(s) 519
BanII GRGCYC 2 cut(s) 117, 459
BbvI GCAGC 2 cut(s) 288, 291
BceAI ACGGC 1 cut(s) 258
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 23, 47, 67
BfrI CTTAAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 302, 305, 612
BlsI GCNGC 3 cut(s) 303, 306, 613
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 89, 569
BmgT120I GGNCC 2 cut(s) 89, 569
BmiI GGNNCC 4 cut(s) 129, 342, 413, 521
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 179, 553
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 2 cut(s) 23, 67
BsaJI CCNNGG 2 cut(s) 33, 240
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 578
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 488
Bse21I CCTNAGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 33, 240
BseGI GGATG 2 cut(s) 194, 204
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 276, 578
BseMII CTCAG 2 cut(s) 92, 289
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 3 cut(s) 58, 82, 85
BseXI GCAGC 2 cut(s) 288, 291
BsgI GTGCAG 2 cut(s) 246, 290
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 270, 337
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 276, 578
BsmAI GTCTC 3 cut(s) 23, 47, 67
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 2 cut(s) 23, 67
Bsp1286I GDGCHC 2 cut(s) 117, 459
Bsp143I GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 4 cut(s) 220, 323, 405, 612
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 91, 288
BspLI GGNNCC 4 cut(s) 129, 342, 413, 521
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 7 cut(s) 122, 135, 180, 188, 335, 348, 440
BspT107I GGYRCC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 193
BspTNI GGTCTC 2 cut(s) 23, 67
BsrBI CCGCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 33, 240
BssMI GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 107
BstAFI CTTAAG 1 cut(s) 193
BstC8I GCNNGC 4 cut(s) 113, 364, 584, 588
BstDEI CTNAG 3 cut(s) 78, 275, 549
BstDSI CCRYGG 2 cut(s) 33, 240
BstF5I GGATG 2 cut(s) 194, 204
BstKTI GATC 9 cut(s) 121, 130, 175, 183, 289, 343, 434, 448, 502
BstMAI GTCTC 3 cut(s) 23, 47, 67
BstMBI GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 288, 291
BstX2I RGATCY 2 cut(s) 127, 340
BstYI RGATCY 2 cut(s) 127, 340
Bsu36I CCTNAGG 1 cut(s) 275
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 2 cut(s) 33, 240
BtsCI GGATG 2 cut(s) 194, 204
BtsIMutI CAGTG 1 cut(s) 86
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 4 cut(s) 113, 364, 584, 588
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 89, 569
Csp6I GTAC 1 cut(s) 520
CspCI CAANNNNNGTGG 4 cut(s) 89, 124, 564, 599
CviAII CATG 2 cut(s) 34, 408
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 3 cut(s) 78, 275, 549
DpnI GATC 9 cut(s) 120, 129, 174, 182, 288, 342, 433, 447, 501
DpnII GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 117, 459
Eco31I GGTCTC 2 cut(s) 23, 67
Eco47I GGWCC 2 cut(s) 89, 569
Eco81I CCTNAGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 117, 459
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 411
FaiI YATR 3 cut(s) 35, 409, 426
FaqI GGGAC 1 cut(s) 520
FatI CATG 2 cut(s) 33, 407
FauI CCCGC 1 cut(s) 412
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 302, 305, 612
FokI GGATG 2 cut(s) 201, 211
FriOI GRGCYC 2 cut(s) 117, 459
Fsp4HI GCNGC 3 cut(s) 302, 305, 612
GluI GCNGC 3 cut(s) 302, 305, 612
HaeIII GGCC 1 cut(s) 273
HapII CCGG 2 cut(s) 270, 337
Hin1II CATG 2 cut(s) 37, 411
HincII GTYRAC 1 cut(s) 320
HindII GTYRAC 1 cut(s) 320
HpaII CCGG 2 cut(s) 270, 337
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 4 cut(s) 89, 127, 431, 436
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 4 cut(s) 145, 171, 407, 505
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 13, 263, 307, 566, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 78, 275, 549
Hsp92II CATG 2 cut(s) 37, 411
KpnI GGTACC 1 cut(s) 523
Kzo9I GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 9 cut(s) 262, 273, 283, 350, 501, 539, 552, 553, 609
Lsp1109I GCAGC 2 cut(s) 288, 291
LweI GCATC 2 cut(s) 179, 553
MaeIII GTNAC 1 cut(s) 139
MalI GATC 9 cut(s) 120, 129, 174, 182, 288, 342, 433, 447, 501
MbiI CCGCTC 1 cut(s) 222
MboI GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
MboII GAAGA 1 cut(s) 572
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 2 cut(s) 127, 340
MhlI GDGCHC 2 cut(s) 117, 459
MluCI AATT 2 cut(s) 8, 14
MmeI TCCRAC 2 cut(s) 155, 368
MseI TTAA 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 193
MspI CCGG 2 cut(s) 270, 337
MspR9I CCNGG 1 cut(s) 338
MunI CAATTG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 617
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 33
NdeII GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
NlaIII CATG 2 cut(s) 37, 411
NlaIV GGNNCC 4 cut(s) 129, 342, 413, 521
NmuCI GTSAC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 3 cut(s) 303, 306, 613
PspN4I GGNNCC 4 cut(s) 129, 342, 413, 521
PspPI GGNCC 2 cut(s) 89, 569
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PsuI RGATCY 2 cut(s) 127, 340
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SalI GTCGAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 302, 305, 612
Sau3AI GATC 9 cut(s) 118, 127, 172, 180, 286, 340, 431, 445, 499
Sau96I GGNCC 2 cut(s) 89, 569
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 2 cut(s) 117, 459
SfaNI GCATC 2 cut(s) 179, 553
SinI GGWCC 2 cut(s) 89, 569
SmlI CTYRAG 2 cut(s) 193, 296
SmoI CTYRAG 2 cut(s) 193, 296
Sse9I AATT 2 cut(s) 8, 14
SsiI CCGC 4 cut(s) 220, 323, 405, 612
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 9 cut(s) 94, 167, 175, 183, 236, 319, 444, 462, 498
TasI AATT 2 cut(s) 8, 14
TauI GCSGC 1 cut(s) 614
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 301, 304
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 86
Vha464I CTTAAG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 89, 569
XmiI GTMKAC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.