Rh5DG116100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001009
Physical Location & Seq
Forward (+)
10509544 .. 10511730
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG116100.1

Sequence Viewer

Length: 594 bp
ATGTTGTCCGGTGGTGGTTCCTCGTGGACCAGTGGTGGTCGAAACGGAAGTCGTACGTTGAAGGCCGCAAGGCTTCCGATCCGGGCCTTGTCAATGCCGCTTGGAATCGATGGTGAGAGGGATAAGCAGAGGCGGAGGTGTGGTGGAATGCAGGCGGGGCTGCAAGATCTCTTCCATCTTTGGGCATCGACGACGAAGAAAAGAGATTTTGGGTTGGCTGGGTGGGCGGCTTGGACTGCAGGGGTGCGATCTGATTTGACTGCAGATCGATACCGCGTTGGTCAGTGGACGGGCGGTGGCCGGTGGTTGTCGTCGATTTCGGGCCACCTCAGATCTACGTTTGAGTGGTCGAGTGATGTCGGGATTTGGCAGCCAGGGAGTGGGAGTGACGGGGATTCTGGTAGAGGTACAACGGCGGGAACGTTCCCAGCGGTGGCTGACTGTGTGCGGGCCTCTAGTTGGGCCTCATGGTACTTGGGCCAGGAGATTCTTTCTAGGCCCATAGTGTTGCATACAAAATCAATACCTGTCATAGTGCATGGAGCCATGTATGCAGTCCTGCAAAACATTTCAAGAATTGGTAACAATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.16

Weight (kDa)

10.59

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 380
AccII CGCG 1 cut(s) 276
AclI AACGTT 1 cut(s) 422
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 298
AfaI GTAC 3 cut(s) 55, 409, 473
AfiI CCNNNNNNNGG 4 cut(s) 181, 380, 433, 459
AgsI TTSAA 2 cut(s) 61, 573
AjnI CCWGG 2 cut(s) 373, 480
AlwI GGATC 1 cut(s) 73
AoxI GGCC 8 cut(s) 63, 84, 298, 322, 450, 462, 478, 497
ApeKI GCWGC 2 cut(s) 160, 370
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspS9I GGNCC 7 cut(s) 27, 84, 322, 450, 462, 478, 498
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 27
BauI CACGAG 1 cut(s) 22
BbvI GCAGC 2 cut(s) 147, 382
BccI CCATC 2 cut(s) 104, 183
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 2 cut(s) 375, 482
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 2 cut(s) 456, 495
BfmI CTRYAG 2 cut(s) 237, 261
BglII AGATCT 2 cut(s) 166, 332
BisI GCNGC 5 cut(s) 66, 98, 161, 228, 371
BlsI GCNGC 5 cut(s) 67, 99, 162, 229, 372
Bme1390I CCNGG 3 cut(s) 83, 375, 482
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 7 cut(s) 27, 84, 322, 450, 462, 478, 498
BmiI GGNNCC 2 cut(s) 19, 544
BmrFI CCNGG 3 cut(s) 83, 375, 482
BmsI GCATC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 2 cut(s) 108, 268
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 370, 400
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 380, 433, 459
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 2 cut(s) 375, 482
BseCI ATCGAT 2 cut(s) 108, 268
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 181, 380, 433, 459
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 147, 382
BseYI CCCAGC 2 cut(s) 218, 427
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 8 cut(s) 65, 86, 300, 324, 452, 464, 480, 499
BshVI ATCGAT 2 cut(s) 108, 268
BsiSI CCGG 3 cut(s) 9, 82, 301
BsiWI CGTACG 1 cut(s) 53
BslI CCNNNNNNNGG 4 cut(s) 181, 380, 433, 459
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 8 cut(s) 65, 86, 300, 324, 452, 464, 480, 499
Bsp143I GATC 5 cut(s) 78, 166, 248, 265, 332
BspANI GGCC 8 cut(s) 65, 86, 300, 324, 452, 464, 480, 499
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 2 cut(s) 108, 268
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 19, 544
BspMAI CTGCAG 2 cut(s) 241, 265
BspPI GGATC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 5 cut(s) 78, 166, 248, 265, 332
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 375, 482
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 153, 450
BstDEI CTNAG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 5 cut(s) 81, 169, 251, 268, 335
BstMBI GATC 5 cut(s) 78, 166, 248, 265, 332
BstMWI GCNNNNNNNGC 4 cut(s) 157, 224, 236, 551
BstNI CCWGG 2 cut(s) 375, 482
BstSCI CCNGG 3 cut(s) 81, 373, 480
BstSFI CTRYAG 2 cut(s) 237, 261
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 147, 382
BstX2I RGATCY 2 cut(s) 166, 332
BstYI RGATCY 2 cut(s) 166, 332
Bsu15I ATCGAT 2 cut(s) 108, 268
BsuRI GGCC 8 cut(s) 65, 86, 300, 324, 452, 464, 480, 499
BsuTUI ATCGAT 2 cut(s) 108, 268
BtsIMutI CAGTG 2 cut(s) 37, 290
Cac8I GCNNGC 2 cut(s) 153, 450
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 7 cut(s) 27, 84, 322, 450, 462, 478, 498
ClaI ATCGAT 2 cut(s) 108, 268
Csp6I GTAC 3 cut(s) 54, 408, 472
CviAII CATG 3 cut(s) 468, 539, 547
CviQI GTAC 3 cut(s) 54, 408, 472
DdeI CTNAG 1 cut(s) 329
DpnI GATC 5 cut(s) 80, 168, 250, 267, 334
DpnII GATC 5 cut(s) 78, 166, 248, 265, 332
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 373, 480
FaeI CATG 3 cut(s) 471, 542, 550
FaiI YATR 7 cut(s) 469, 503, 513, 533, 540, 548, 552
FatI CATG 3 cut(s) 467, 538, 546
FauI CCCGC 3 cut(s) 148, 409, 441
Fnu4HI GCNGC 5 cut(s) 66, 98, 161, 228, 371
Fsp4HI GCNGC 5 cut(s) 66, 98, 161, 228, 371
FspBI CTAG 2 cut(s) 456, 495
GluI GCNGC 5 cut(s) 66, 98, 161, 228, 371
GsaI CCCAGC 2 cut(s) 222, 431
HaeIII GGCC 8 cut(s) 65, 86, 300, 324, 452, 464, 480, 499
HapII CCGG 3 cut(s) 9, 82, 301
Hin1II CATG 3 cut(s) 471, 542, 550
HinfI GANTC 3 cut(s) 105, 395, 487
HpaII CCGG 3 cut(s) 9, 82, 301
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 27, 288
Hpy188I TCNGA 3 cut(s) 78, 253, 332
Hpy188III TCNNGA 2 cut(s) 361, 573
Hpy8I GTNNAC 2 cut(s) 27, 288
Hpy99I CGWCG 3 cut(s) 193, 196, 316
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 3 cut(s) 56, 338, 422
HpyCH4V TGCA 8 cut(s) 151, 163, 239, 263, 511, 538, 554, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 224, 236, 551
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 3 cut(s) 56, 338, 422
Hsp92II CATG 3 cut(s) 471, 542, 550
Kzo9I GATC 5 cut(s) 78, 166, 248, 265, 332
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 2 cut(s) 147, 382
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 456, 495
MaeII ACGT 3 cut(s) 56, 338, 422
MaeIII GTNAC 2 cut(s) 386, 581
MalI GATC 5 cut(s) 80, 168, 250, 267, 334
MboI GATC 5 cut(s) 78, 166, 248, 265, 332
MboII GAAGA 2 cut(s) 163, 208
MflI RGATCY 2 cut(s) 166, 332
MluCI AATT 1 cut(s) 576
MnlI CCTC 8 cut(s) 31, 111, 123, 129, 338, 398, 463, 475
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 3 cut(s) 9, 82, 301
MspR9I CCNGG 3 cut(s) 83, 375, 482
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 2 cut(s) 375, 482
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 157, 224, 236, 551
NciI CCSGG 1 cut(s) 83
NdeII GATC 5 cut(s) 78, 166, 248, 265, 332
NlaIII CATG 3 cut(s) 471, 542, 550
NlaIV GGNNCC 2 cut(s) 19, 544
NmuCI GTSAC 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 153
PfeI GAWTC 3 cut(s) 105, 395, 487
Pfl23II CGTACG 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 5 cut(s) 67, 99, 162, 229, 372
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 373, 480
PspFI CCCAGC 2 cut(s) 218, 427
PspGI CCWGG 2 cut(s) 373, 480
PspLI CGTACG 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 19, 544
PspPI GGNCC 7 cut(s) 27, 84, 322, 450, 462, 478, 498
PstI CTGCAG 2 cut(s) 241, 265
PsuI RGATCY 2 cut(s) 166, 332
RsaI GTAC 3 cut(s) 55, 409, 473
RsaNI GTAC 3 cut(s) 54, 408, 472
SatI GCNGC 5 cut(s) 66, 98, 161, 228, 371
Sau3AI GATC 5 cut(s) 78, 166, 248, 265, 332
Sau96I GGNCC 7 cut(s) 27, 84, 322, 450, 462, 478, 498
ScrFI CCNGG 3 cut(s) 83, 375, 482
SetI ASST 7 cut(s) 59, 140, 330, 341, 409, 425, 529
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 237, 261
SinI GGWCC 1 cut(s) 27
Sse9I AATT 1 cut(s) 576
SspMI CTAG 2 cut(s) 456, 495
StyD4I CCNGG 3 cut(s) 81, 373, 480
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 3 cut(s) 59, 341, 425
TaqI TCGA 6 cut(s) 40, 108, 188, 268, 314, 350
TasI AATT 1 cut(s) 576
TauI GCSGC 3 cut(s) 68, 100, 230
TfiI GAWTC 3 cut(s) 105, 395, 487
TscAI CASTG 2 cut(s) 37, 290
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 160, 370
Tsp45I GTSAC 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 37, 290
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 27
XspI CTAG 2 cut(s) 456, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.