Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006432.1

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

11329 .. 12063

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006432.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgagagtcgagagcgagagcgtgccctctcaaaaccctagcgccgcctcttgtaggctgcttccagggaggtcttcagcacctccagtcccaggtttctctcaacgcttatgccttgaggcggatcgattccattctcggtgtaaggaatggtgggttgcggcagtggtcgtggatggcgggtcaaggttgttggtggcggcgctgcagcgcggtggcagagtcctgcttcggcgggtagcgcagcggctgatgcctaagccgctggtgcggtccacgggggtgggctggctgcttgtggcggcgggattgctcactttctgggttgatctgctggtagcgctggcttggctgttcggagttgcttttttggctactcggcatctcgggtctggtagtttggaggttgctggtatggtggctacactgggtatggatgacgtatgcattcggcgacggtcgacggctgcaacgggttcttgggctgctgggcccaactcagcccatatgttgagttttgattctcctttgggttggatttgggatccaggagacagtgtggttgaatttttgctcaattgtcaagaggcttgccctaaagctaagggcaaaaggaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.3

Weight (kDa)

9.88

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	461
AccII	CGCG	1 cut(s)	213
AclWI	GGATC	3 cut(s)	132, 539, 552
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	54, 92, 121
AgsI	TTSAA	1 cut(s)	566
AjnI	CCWGG	3 cut(s)	64, 91, 547
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	1 cut(s)	602
AluI	AGCT	1 cut(s)	602
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	132, 539, 552
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	1 cut(s)	491
ApaI	GGGCCC	1 cut(s)	495
ApeKI	GCWGC	7 cut(s)	58, 205, 208, 244, 292, 467, 485
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	5 cut(s)	44, 205, 213, 244, 343
AspS9I	GGNCC	3 cut(s)	273, 491, 492
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	27, 495
BamHI	GGATCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	7 cut(s)	45, 192, 220, 256, 279, 454, 472
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	3 cut(s)	66, 93, 549
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	3 cut(s)	45, 206, 344
Bme1390I	CCNGG	3 cut(s)	66, 93, 549
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	273, 491, 492
BmiI	GGNNCC	2 cut(s)	493, 546
BmrFI	CCNGG	3 cut(s)	66, 93, 549
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	243, 391
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	2 cut(s)	258, 603
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	65, 91, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 92, 121
Bse1I	ACTGG	2 cut(s)	86, 432
BseBI	CCWGG	3 cut(s)	66, 93, 549
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	65, 91, 276
BseGI	GGATG	2 cut(s)	181, 442
BseLI	CCNNNNNNNGG	3 cut(s)	54, 92, 121
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	86, 432
BseSI	GKGCMC	2 cut(s)	27, 495
BseXI	GCAGC	7 cut(s)	45, 192, 220, 256, 279, 454, 472
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	54, 92, 121
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	386
Bsp120I	GGGCCC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	27, 495
Bsp143I	GATC	3 cut(s)	124, 328, 544
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	1 cut(s)	512
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	493, 546
BspMAI	CTGCAG	1 cut(s)	210
BspPI	GGATC	3 cut(s)	132, 539, 552
BsrI	ACTGG	2 cut(s)	86, 432
BssECI	CCNNGG	3 cut(s)	65, 91, 276
BssMI	GATC	3 cut(s)	124, 328, 544
Bst2UI	CCWGG	3 cut(s)	66, 93, 549
Bst4CI	ACNGT	2 cut(s)	459, 557
BstC8I	GCNNGC	4 cut(s)	23, 290, 345, 592
BstDEI	CTNAG	3 cut(s)	258, 499, 603
BstDSI	CCRYGG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	181, 442
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	3 cut(s)	45, 206, 344
BstHHI	GCGC	5 cut(s)	44, 205, 213, 244, 343
BstKTI	GATC	3 cut(s)	127, 331, 547
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	3 cut(s)	124, 328, 544
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	7 cut(s)	241, 253, 262, 268, 340, 349, 371
BstNI	CCWGG	3 cut(s)	66, 93, 549
BstSCI	CCNGG	3 cut(s)	64, 91, 547
BstSFI	CTRYAG	1 cut(s)	206
BstSLI	GKGCMC	2 cut(s)	27, 495
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	7 cut(s)	45, 192, 220, 256, 279, 454, 472
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	544
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	493
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	181, 442
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	171, 425, 562
Cac8I	GCNNGC	4 cut(s)	23, 290, 345, 592
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	5 cut(s)	44, 205, 213, 244, 343
Cfr13I	GGNCC	3 cut(s)	273, 491, 492
ClaI	ATCGAT	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	258, 499, 603
DpnI	GATC	3 cut(s)	126, 330, 546
DpnII	GATC	3 cut(s)	124, 328, 544
EciI	GGCGGA	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	64, 91, 547
EcoT22I	ATGCAT	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	495
FaiI	YATR	6 cut(s)	112, 416, 434, 445, 507, 509
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	3 cut(s)	173, 228, 298
FauNDI	CATATG	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	461
FokI	GGATG	2 cut(s)	188, 449
FriOI	GRGCYC	1 cut(s)	495
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	5 cut(s)	43, 204, 212, 243, 342
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	3 cut(s)	45, 206, 344
HaeIII	GGCC	1 cut(s)	493
HhaI	GCGC	5 cut(s)	44, 205, 213, 244, 343
Hin6I	GCGC	5 cut(s)	42, 203, 211, 242, 341
HinP1I	GCGC	5 cut(s)	42, 203, 211, 242, 341
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	4 cut(s)	6, 129, 222, 521
Hpy166II	GTNNAC	2 cut(s)	276, 462
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	2 cut(s)	10, 584
Hpy8I	GTNNAC	2 cut(s)	276, 462
Hpy99I	CGWCG	2 cut(s)	459, 466
HpyCH4III	ACNGT	2 cut(s)	459, 557
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	208, 447, 470
HpyF10VI	GCNNNNNNNGC	7 cut(s)	241, 253, 262, 268, 340, 349, 371
HpyF3I	CTNAG	3 cut(s)	258, 499, 603
HpySE526I	ACGT	1 cut(s)	441
HspAI	GCGC	5 cut(s)	42, 203, 211, 242, 341
Kzo9I	GATC	3 cut(s)	124, 328, 544
Lsp1109I	GCAGC	7 cut(s)	45, 192, 220, 256, 279, 454, 472
LweI	GCATC	2 cut(s)	243, 391
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	441
MalI	GATC	3 cut(s)	126, 330, 546
MboI	GATC	3 cut(s)	124, 328, 544
MboII	GAAGA	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	27, 495
MluCI	AATT	2 cut(s)	566, 577
MlyI	GAGTC	2 cut(s)	15, 231
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	7 cut(s)	37, 58, 63, 93, 112, 397, 580
Mph1103I	ATGCAT	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	247, 265
MspR9I	CCNGG	3 cut(s)	66, 93, 549
MunI	CAATTG	1 cut(s)	577
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	3 cut(s)	66, 93, 549
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	7 cut(s)	241, 253, 262, 268, 340, 349, 371
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	3 cut(s)	124, 328, 544
NlaIV	GGNNCC	2 cut(s)	493, 546
NmeAIII	GCCGAG	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	281
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	129, 521
PfoI	TCCNGGA	1 cut(s)	547
PleI	GAGTC	2 cut(s)	14, 230
PpsI	GAGTC	2 cut(s)	14, 230
Psp6I	CCWGG	3 cut(s)	64, 91, 547
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	3 cut(s)	64, 91, 547
PspN4I	GGNNCC	2 cut(s)	493, 546
PspOMI	GGGCCC	1 cut(s)	491
PspPI	GGNCC	3 cut(s)	273, 491, 492
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	460
Sau3AI	GATC	3 cut(s)	124, 328, 544
Sau96I	GGNCC	3 cut(s)	273, 491, 492
SchI	GAGTC	2 cut(s)	15, 231
ScrFI	CCNGG	3 cut(s)	66, 93, 549
SduI	GDGCHC	2 cut(s)	27, 495
SetI	ASST	7 cut(s)	74, 85, 97, 191, 408, 444, 604
SfaNI	GCATC	2 cut(s)	243, 391
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	566, 577
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	64, 91, 547
TaaI	ACNGT	2 cut(s)	459, 557
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	9, 127, 461
TasI	AATT	2 cut(s)	566, 577
TauI	GCSGC	6 cut(s)	47, 164, 203, 250, 265, 305
TfiI	GAWTC	2 cut(s)	129, 521
TscAI	CASTG	3 cut(s)	171, 432, 562
TseI	GCWGC	7 cut(s)	58, 205, 208, 244, 292, 467, 485
TspRI	CASTG	3 cut(s)	171, 432, 562
VpaK11BI	GGWCC	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	461
XspI	CTAG	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.