Rroxscaffold_6G00398320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001009
Physical Location & Seq
Forward (+)
20215515 .. 20219341
3827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398320.1

Sequence Viewer

Length: 222 bp
ATGAAGGAGAAGCTACCCATTGATTTAGATGGTACCATTTACGGTGGAGAATTCGTTCAAGGGGATGTTGCTCGAGGTGGGTTGTGCAAACCATTGAAGATCGCTCTGTTAGGTTTGGCAACTTTGATGGAGACTTGGATTGCATGCAAGAGGCTGCATGGTGTATGTTTGAGGGAAAGAGTTGTTGTCCAAGGGTCAAGTTTGAGTACTTCTCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.87

Weight (kDa)

8.57

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 2 cut(s) 34, 208
AgsI TTSAA 2 cut(s) 59, 97
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 72
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 23, 121
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 34
BplI GAGNNNNNCTC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 33, 207
CviAII CATG 2 cut(s) 144, 158
CviJI RGCY 2 cut(s) 13, 154
CviKI_1 RGCY 2 cut(s) 13, 154
CviQI GTAC 2 cut(s) 33, 207
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 147, 161
FaiI YATR 3 cut(s) 145, 159, 166
FatI CATG 2 cut(s) 143, 157
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
Hin1II CATG 2 cut(s) 147, 161
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 87, 143, 147, 157
Hsp92II CATG 2 cut(s) 147, 161
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 141
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 50
MnlI CCTC 3 cut(s) 68, 144, 165
MroXI GAANNNNTTC 1 cut(s) 54
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 147, 161
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 72
RsaI GTAC 2 cut(s) 34, 208
RsaNI GTAC 2 cut(s) 33, 207
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 208
SetI ASST 3 cut(s) 15, 79, 115
Sfr274I CTCGAG 1 cut(s) 72
SgeI CNNG 9 cut(s) 71, 84, 86, 147, 156, 160, 170, 203, 210
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SphI GCATGC 1 cut(s) 147
Sse9I AATT 1 cut(s) 50
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 50
TatI WGTACW 1 cut(s) 206
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.