Rroxscaffold_4G00297310

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001009
Physical Location & Seq
Reverse (-)
17241441 .. 17249447
8007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297310.1

Sequence Viewer

Length: 597 bp
ATGAAAACGAAACATTATGAGGAGTTGAACAAGTTAAAGACCAGAAGAATTCTTTTCTTCTTGTTTGTTCTCTTTGGATCAATTTCAAGCATTAATCGTGGAAACCAAATGTACTTAACGAGATTTGATTCGAATTGCAAGTCATATAAGTCCAAGAGAAAGATTAAACGGGTAATCCATTATCCAAAGCTAGAGGTGTTAAACAACGACAAGTGGGGCGTGGCCACTATTGTACGATATCGTCTCAATCACCCATTAGGTACCATTTATGGTGGAGAATTCGTTCAAGGGGATGTTGCTCGAAGTGAGTTGTGCAAACCATTAAAGATCGCTCCTATTAGGTTTGGCAACTTTGATGGAGACTTGGATTGCATGCAAGCGGCTGCACGGTGCATGTTTGAGGGAAAGAATTGTATATTCATACTTGGTGCACGTCTTTGGGACGTCGTCGTCGGACGGGCCGAAGAGGACTTGTTGTCCCGTGGTGGTTCCTCATGGAACAGTGGTGGTCAAAGTAGGGGTAGTACGTTGATGGCAGCAAGGTTTTCAGTTCCACCCTTATCAATGTCGCTTGGAAACGTTGGTGAGAGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.38

Weight (kDa)

9.79

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AatII GACGTC 1 cut(s) 447
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 1 cut(s) 380
AclI AACGTT 1 cut(s) 579
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 48, 278
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 4 cut(s) 113, 234, 262, 526
AgsI TTSAA 3 cut(s) 28, 87, 287
AhdI GACNNNNNGTC 1 cut(s) 475
AjiI CACGTC 1 cut(s) 434
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 2 cut(s) 248, 354
Alw44I GTGCAC 1 cut(s) 429
AlwI GGATC 1 cut(s) 85
AoxI GGCC 2 cut(s) 222, 459
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 383, 536
ApoI RAATTY 2 cut(s) 48, 278
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 282
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 242, 596
AsuII TTCGAA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 433
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 370, 548
BccI CCATC 2 cut(s) 350, 526
BcoDI GTCTC 2 cut(s) 248, 354
BfaI CTAG 1 cut(s) 191
BisI GCNGC 3 cut(s) 381, 384, 537
BlsI GCNGC 3 cut(s) 382, 385, 538
BmeRI GACNNNNNGTC 1 cut(s) 475
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 262, 490
Bpu14I TTCGAA 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 370, 548
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 224, 461
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 433
BslFI GGGAC 2 cut(s) 455, 463
BsmAI GTCTC 2 cut(s) 248, 354
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 455, 463
BsnI GGCC 2 cut(s) 224, 461
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 2 cut(s) 77, 327
BspACI CCGC 1 cut(s) 380
BspANI GGCC 2 cut(s) 224, 461
BspLI GGNNCC 2 cut(s) 262, 490
BspPI GGATC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 77, 327
BssNI GRCGYC 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 390, 503
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 444
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 374, 378
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 80, 330
BstMAI GTCTC 2 cut(s) 248, 354
BstMBI GATC 2 cut(s) 77, 327
BstNSI RCATGY 2 cut(s) 376, 397
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 370, 548
BsuRI GGCC 2 cut(s) 224, 461
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 374, 378
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 4 cut(s) 112, 233, 261, 525
CviAII CATG 3 cut(s) 373, 394, 495
CviJI RGCY 4 cut(s) 190, 224, 383, 461
CviKI_1 RGCY 4 cut(s) 190, 224, 383, 461
CviQI GTAC 4 cut(s) 112, 233, 261, 525
DpnI GATC 2 cut(s) 79, 329
DpnII GATC 2 cut(s) 77, 327
DrdI GACNNNNNNGTC 1 cut(s) 449
DriI GACNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 459
Eco32I GATATC 1 cut(s) 239
EcoRI GAATTC 2 cut(s) 48, 278
EcoRV GATATC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 3 cut(s) 376, 397, 498
FaiI YATR 9 cut(s) 18, 145, 147, 270, 374, 395, 416, 422, 496
FaqI GGGAC 2 cut(s) 455, 463
FatI CATG 3 cut(s) 372, 393, 494
Fnu4HI GCNGC 3 cut(s) 381, 384, 537
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 381, 384, 537
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 381, 384, 537
HaeIII GGCC 2 cut(s) 224, 461
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 376, 397, 498
HinfI GANTC 1 cut(s) 128
HphI GGTGA 2 cut(s) 242, 596
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 3 cut(s) 449, 452, 455
HpyCH4III ACNGT 2 cut(s) 390, 503
HpyCH4IV ACGT 4 cut(s) 433, 444, 527, 579
HpyCH4V TGCA 7 cut(s) 138, 315, 372, 376, 386, 393, 431
HpySE526I ACGT 4 cut(s) 433, 444, 527, 579
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 376, 397, 498
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 77, 327
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 370, 548
MaeI CTAG 1 cut(s) 191
MaeII ACGT 4 cut(s) 433, 444, 527, 579
MalI GATC 2 cut(s) 79, 329
MboI GATC 2 cut(s) 77, 327
MboII GAAGA 3 cut(s) 49, 57, 476
MhlI GDGCHC 1 cut(s) 433
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 5 cut(s) 48, 81, 133, 278, 409
MluNI TGGCCA 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 6 cut(s) 13, 187, 394, 460, 502, 582
Mox20I TGGCCA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 282
MscI TGGCCA 1 cut(s) 224
MseI TTAA 6 cut(s) 35, 93, 116, 165, 200, 323
Msp20I TGGCCA 1 cut(s) 224
NdeII GATC 2 cut(s) 77, 327
NlaIII CATG 3 cut(s) 376, 397, 498
NlaIV GGNNCC 2 cut(s) 262, 490
NspI RCATGY 2 cut(s) 376, 397
NspV TTCGAA 1 cut(s) 131
PaeI GCATGC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 382, 385, 538
PshBI ATTAAT 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 579
PspN4I GGNNCC 2 cut(s) 262, 490
PspPI GGNCC 1 cut(s) 459
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 4 cut(s) 113, 234, 262, 526
RsaNI GTAC 4 cut(s) 112, 233, 261, 525
SaqAI TTAA 6 cut(s) 35, 93, 116, 165, 200, 323
SatI GCNGC 3 cut(s) 381, 384, 537
Sau3AI GATC 2 cut(s) 77, 327
Sau96I GGNCC 1 cut(s) 459
SduI GDGCHC 1 cut(s) 433
SetI ASST 9 cut(s) 192, 198, 262, 344, 436, 447, 530, 545, 582
SfuI TTCGAA 1 cut(s) 131
SphI GCATGC 1 cut(s) 376
Sse9I AATT 5 cut(s) 48, 81, 133, 278, 409
SsiI CCGC 1 cut(s) 380
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 390, 503
TaiI ACGT 4 cut(s) 436, 447, 530, 582
TaqI TCGA 2 cut(s) 131, 301
TasI AATT 5 cut(s) 48, 81, 133, 278, 409
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 6 cut(s) 35, 93, 116, 165, 200, 323
Tru9I TTAA 6 cut(s) 35, 93, 116, 165, 200, 323
TscAI CASTG 1 cut(s) 508
TseI GCWGC 2 cut(s) 383, 536
TspDTI ATGAA 2 cut(s) 17, 409
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 446
VneI GTGCAC 1 cut(s) 429
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 2 cut(s) 48, 278
XceI RCATGY 2 cut(s) 376, 397
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 191
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.