Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

71594832 .. 71595398

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCTTGTCTGGTAGCTCGTCCTTGGGACGTCGTCGTCGGACGGGCTAGACAAGACGGATTGTCCGTGGGTAGTTCCTCATGGAACATTGGTGGTCAGAGTGAGGGCTGCATGTTGAAGGCATCAGGGTGTCTAGATCAGGCCCTGTCATTGTCGCTTGGAAGCTTTAGTGTGAGGGGAAAGCAGAGGAGTAGTGGTGGTGGTAGACTGGTGGGGCTGCGTGATCTACAACCGGATCGCGGTGTCTCCCATCTCTGGCCAACAATGATAAAGGAGGAAGCATACCAGTTAGTTGGGTCGGTAGGTTTGAATGCAGAAGTGGCGCGACCTGATCCGATCTCTGACCAATGCATTGTAGATGAATGGATTAGTGGTGACAGGTGTTGGGGGTTGTCACCAGTTTCCGACCATCTCAAAGTTGCATTTGGGGGGTTGGGCGTTGTCGGGTTTTGGCAGCCAGGGTGGAGTGGAGGGGGATCTGGTGGAGGAAGCTTCAAGTGGTGGTGTCGAGGTGTAATGGTGAGGATGCTCCTTAAGGTGACTGATTGCGTGCAGATCCCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.03

Weight (kDa)

8.2

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	2 cut(s)	240, 325
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	4 cut(s)	243, 326, 484, 550
AcoI	YGGCCR	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	239, 255
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	118, 310, 496
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	17, 165, 492
AluI	AGCT	3 cut(s)	17, 165, 492
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	4 cut(s)	243, 326, 484, 550
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	141, 257
ApeKI	GCWGC	3 cut(s)	108, 217, 454
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	386, 387, 532, 550
BalI	TGGCCA	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	95, 204, 466
BccI	CCATC	2 cut(s)	258, 417
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	48, 134
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	3 cut(s)	109, 218, 455
BlsI	GCNGC	3 cut(s)	110, 219, 456
Bme1390I	CCNGG	1 cut(s)	459
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	131, 516
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	23, 66, 458
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 255
Bse1I	ACTGG	3 cut(s)	213, 286, 398
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	23, 66, 458
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	239, 255
BseNI	ACTGG	3 cut(s)	213, 286, 398
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	95, 204, 466
Bsh1236I	CGCG	2 cut(s)	240, 325
BshFI	GGCC	2 cut(s)	143, 259
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	239, 255
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	143, 259
Bsp143I	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	143, 259
BspFNI	CGCG	2 cut(s)	240, 325
BspPI	GGATC	4 cut(s)	243, 326, 484, 550
BspTI	CTTAAG	1 cut(s)	533
BsrI	ACTGG	3 cut(s)	213, 286, 398
BssECI	CCNNGG	3 cut(s)	23, 66, 458
BssMI	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	2 cut(s)	240, 325
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	7 cut(s)	139, 226, 238, 334, 339, 479, 558
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	2 cut(s)	240, 325
BstV1I	GCAGC	3 cut(s)	95, 204, 466
BstX2I	RGATCY	2 cut(s)	476, 555
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	2 cut(s)	476, 555
BsuRI	GGCC	2 cut(s)	143, 259
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	551
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	2 cut(s)	81, 112
CviJI	RGCY	9 cut(s)	17, 47, 108, 143, 165, 217, 259, 457, 492
CviKI_1	RGCY	9 cut(s)	17, 47, 108, 143, 165, 217, 259, 457, 492
DpnI	GATC	7 cut(s)	138, 225, 237, 333, 338, 478, 557
DpnII	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
DrdI	GACNNNNNNGTC	1 cut(s)	35
DriI	GACNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	84, 115
FaiI	YATR	3 cut(s)	82, 113, 283
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	2 cut(s)	80, 111
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	109, 218, 455
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	3 cut(s)	109, 218, 455
FspBI	CTAG	2 cut(s)	48, 134
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	3 cut(s)	109, 218, 455
HaeIII	GGCC	2 cut(s)	143, 259
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	84, 115
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	2 cut(s)	163, 490
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	4 cut(s)	386, 387, 532, 550
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	5 cut(s)	41, 99, 336, 343, 406
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	3 cut(s)	35, 38, 41
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	111, 314, 351, 422, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	84, 115
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
LmnI	GCTCC	1 cut(s)	534
Lsp1109I	GCAGC	3 cut(s)	95, 204, 466
LweI	GCATC	2 cut(s)	131, 516
MaeI	CTAG	2 cut(s)	48, 134
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	374, 393, 538
MalI	GATC	7 cut(s)	138, 225, 237, 333, 338, 478, 557
MboI	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
MflI	RGATCY	2 cut(s)	476, 555
MlsI	TGGCCA	1 cut(s)	259
MluNI	TGGCCA	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	19, 429
MnlI	CCTC	9 cut(s)	88, 97, 168, 180, 268, 464, 479, 503, 516
Mox20I	TGGCCA	1 cut(s)	259
Mph1103I	ATGCAT	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	259
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	240, 325
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
NlaIII	CATG	2 cut(s)	84, 115
NmuCI	GTSAC	3 cut(s)	374, 393, 538
NsiI	ATGCAT	1 cut(s)	353
NspI	RCATGY	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	110, 219, 456
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	476, 555
PsyI	GACNNNGTC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	109, 218, 455
Sau3AI	GATC	7 cut(s)	136, 223, 235, 331, 336, 476, 555
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	9 cut(s)	19, 33, 167, 307, 331, 383, 494, 514, 540
SfaNI	GCATC	2 cut(s)	131, 516
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	2 cut(s)	48, 134
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TseFI	GTSAC	3 cut(s)	374, 393, 538
TseI	GCWGC	3 cut(s)	108, 217, 454
Tsp45I	GTSAC	3 cut(s)	374, 393, 538
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	2 cut(s)	55, 72
Tth111I	GACNNNGTC	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	2 cut(s)	48, 134
ZraI	GACGTC	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.