Rroxscaffold_2G00096810

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001009
Physical Location & Seq
Reverse (-)
18130994 .. 18131302
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096810.1

Sequence Viewer

Length: 309 bp
ATGCTAGCTCCCGCATATTCCACAATTAAGGTGTCATCTACTTTGGAGAGTAGATTTAGTAAGGACAATGAGAAGCAAACTTGGTGTTATGAGAATGATGTGTCAAGAGAAGGTACCATTTATGGTGGAGAATTCGTTCAAGGAGATGTTGCTCGAGGTGAGTTATGCAAACCATTAAAGATCGCTCCTATTAGGTTTGGCAACTTTGATGGAGACTTGGATTGCATGCAAGCGGCTGCACAAAGTGTATGTTTGAGGGAAAGAGTTGTTGTCCAAGGGTCAAGTTTGATGCTTCTCAAACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.3

Weight (kDa)

5.12

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 2 cut(s) 12, 233
AcsI RAATTY 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 170
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 153
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 234, 237
BlsI GCNGC 2 cut(s) 235, 238
BmeT110I CYCGRG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
BseDI CCNNGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 12, 233
BspLI GGNNCC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 6, 227, 231
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 6, 227, 231
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 226
CviJI RGCY 2 cut(s) 8, 236
CviKI_1 RGCY 2 cut(s) 8, 236
CviQI GTAC 1 cut(s) 114
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 16, 90, 123, 166, 227, 250
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 234, 237
Fsp4HI GCNGC 2 cut(s) 234, 237
FspBI CTAG 1 cut(s) 5
GluI GCNGC 2 cut(s) 234, 237
Hin1II CATG 1 cut(s) 229
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 168, 225, 229, 239
Hsp92II CATG 1 cut(s) 229
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 13, 190
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 5
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MluCI AATT 2 cut(s) 24, 131
MnlI CCTC 2 cut(s) 149, 249
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 2 cut(s) 27, 176
NdeII GATC 1 cut(s) 180
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 115
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 235, 238
PspN4I GGNNCC 1 cut(s) 115
PspXI VCTCGAGB 1 cut(s) 153
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 27, 176
SatI GCNGC 2 cut(s) 234, 237
Sau3AI GATC 1 cut(s) 180
SetI ASST 5 cut(s) 10, 33, 115, 160, 197
SfaNI GCATC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SphI GCATGC 1 cut(s) 229
Sse9I AATT 2 cut(s) 24, 131
SsiI CCGC 2 cut(s) 12, 233
SspMI CTAG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 154
TasI AATT 2 cut(s) 24, 131
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 27, 176
Tru9I TTAA 2 cut(s) 27, 176
TseI GCWGC 1 cut(s) 236
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.