Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

24842514 .. 24847594

Gene Structure 5081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTGTGCTGATTCAATTCTGGGATTAGCATGCTGCCATCCTAACCCACATCAGAGGCCTTCCATGAGAACTGTCATTAAGGTTCTTACAAGGGAAGCAGATCCACTATTGTCGCCCACCGAAAGACCTGATTTTATGTGGCCAGCCATGCCTCCATCATTCCAAGAGACAACTTTGGATGGAAGTCAGATTACTACATTCACAGAAGATCAATCAACCAAAAAGCTACAGGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACACCTTGGAACTGGTCTTCAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGCCTATGTACTTTTTGGTATGGATCATCATATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

9.37

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AclWI	GGATC	2 cut(s)	95, 488
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	449, 467
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	15, 318
AluBI	AGCT	3 cut(s)	226, 348, 413
AluI	AGCT	3 cut(s)	226, 348, 413
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	161, 422
AlwI	GGATC	2 cut(s)	95, 488
AoxI	GGCC	2 cut(s)	56, 140
ApeKI	GCWGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	4 cut(s)	175, 207, 449, 481
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	3 cut(s)	45, 163, 173
BceAI	ACGGC	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	161, 422
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	37, 184
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	2 cut(s)	58, 142
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	351, 381
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	161, 422
BsnI	GGCC	2 cut(s)	58, 142
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	3 cut(s)	100, 208, 480
BspANI	GGCC	2 cut(s)	58, 142
BspCNI	CTCAG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	95, 488
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	100, 208, 480
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	31, 144
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	37, 184
BstKTI	GATC	3 cut(s)	103, 211, 483
BstMAI	GTCTC	2 cut(s)	161, 422
BstMBI	GATC	3 cut(s)	100, 208, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 250, 270
BstNSI	RCATGY	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	58, 142
BtsCI	GGATG	2 cut(s)	37, 184
Cac8I	GCNNGC	2 cut(s)	31, 144
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	338
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	448, 466
CspCI	CAANNNNNGTGG	4 cut(s)	280, 315, 420, 455
CviAII	CATG	4 cut(s)	30, 64, 148, 454
CviQI	GTAC	2 cut(s)	448, 466
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	102, 210, 482
DpnII	GATC	3 cut(s)	100, 208, 480
EaeI	YGGCCR	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	33, 67, 151, 457
FatI	CATG	4 cut(s)	29, 63, 147, 453
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	24, 191
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	58, 142
HapII	CCGG	2 cut(s)	351, 381
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	33, 67, 151, 457
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	2 cut(s)	351, 381
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	3 cut(s)	54, 189, 240
Hpy188III	TCNNGA	2 cut(s)	318, 454
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	69, 324
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 250, 270
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	33, 67, 151, 457
Kzo9I	GATC	3 cut(s)	100, 208, 480
LmnI	GCTCC	2 cut(s)	261, 353
LpnPI	CCDG	7 cut(s)	5, 141, 156, 215, 364, 381, 394
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	326
MalI	GATC	3 cut(s)	102, 210, 482
MboI	GATC	3 cut(s)	100, 208, 480
MboII	GAAGA	2 cut(s)	218, 392
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	350
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	3 cut(s)	15, 245, 275
MluNI	TGGCCA	1 cut(s)	142
MnlI	CCTC	3 cut(s)	48, 162, 234
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	3 cut(s)	78, 257, 278
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	2 cut(s)	351, 381
MwoI	GCNNNNNNNGC	3 cut(s)	148, 250, 270
NdeII	GATC	3 cut(s)	100, 208, 480
NlaIII	CATG	4 cut(s)	33, 67, 151, 457
NlaIV	GGNNCC	1 cut(s)	339
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PagI	TCATGA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	449, 467
RsaNI	GTAC	2 cut(s)	448, 466
SacI	GAGCTC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	78, 257, 278
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	3 cut(s)	100, 208, 480
Sau96I	GGNCC	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	8 cut(s)	84, 130, 228, 316, 329, 350, 390, 415
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	338
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	3 cut(s)	15, 245, 275
SseBI	AGGCCT	1 cut(s)	58
SstI	GAGCTC	1 cut(s)	350
StuI	AGGCCT	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	329
TasI	AATT	3 cut(s)	15, 245, 275
TatI	WGTACW	2 cut(s)	447, 465
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	78, 257, 278
Tru9I	TTAA	3 cut(s)	78, 257, 278
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	338
XceI	RCATGY	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.