Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

76077911 .. 76081394

Gene Structure 3484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG532500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTTGTCTGGCAGCGCGTCCTTGGGACGTCGTCGTCGGACGGGCTAGACAGGACGGGTTGTCCGTGGGTAGTTCCTTATGGAACATTGGTGGTCGGAGTGAGGGCTGCATGTTGAAGGCATCAGGGTGTCTAGATCAGGCCCTGTCATTGCCGCTTGGAAGCTTTGGTGTGAGGGGAAAGCAGAGGAGGAGTGGTAGTGGTAGACGGCCGGGGCTGCGTGATCTACAACCGGATCGCGGTGTCTCCCATCTCTGGCCAACAACGATAAAGGAGGAAGCATACCAGTTAGTTAGGTCGGCGGGTTTGAATGCAAAAGTGGCGCGACCTGATCCGATCTCTGACCAATGCATTGTAGATCAATGGATTAGTGGTGACAGGTGTTGGGGGTTGTCGCCAGTTTCTGACCATCTCAAAGTTGCATTTGGGGCGTCGGGTGTTGTCGGGTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.15

Weight (kDa)

9.44

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	3 cut(s)	19, 240, 325
AciI	CCGC	3 cut(s)	155, 240, 302
AclWI	GGATC	2 cut(s)	243, 326
AcoI	YGGCCR	2 cut(s)	209, 257
AcyI	GRCGYC	2 cut(s)	30, 431
AfiI	CCNNNNNNNGG	2 cut(s)	239, 255
AgsI	TTSAA	2 cut(s)	118, 310
AhdI	GACNNNNNGTC	1 cut(s)	61
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	243, 326
AlwNI	CAGNNNCTG	2 cut(s)	145, 404
AoxI	GGCC	3 cut(s)	141, 209, 257
ApeKI	GCWGC	3 cut(s)	14, 108, 217
AspLEI	GCGC	2 cut(s)	19, 325
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	26, 95, 204
BccI	CCATC	2 cut(s)	258, 417
BceAI	ACGGC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	48, 134
BisI	GCNGC	4 cut(s)	15, 109, 155, 218
BlsI	GCNGC	4 cut(s)	16, 110, 156, 219
Bme1390I	CCNGG	1 cut(s)	213
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	213
BsaHI	GRCGYC	2 cut(s)	30, 431
BsaJI	CCNNGG	3 cut(s)	23, 66, 212
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 184, 211, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 255
Bse1I	ACTGG	2 cut(s)	286, 398
Bse3DI	GCAATG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	23, 66, 212
BseLI	CCNNNNNNNGG	2 cut(s)	239, 255
BseMI	GCAATG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	286, 398
BseRI	GAGGAG	2 cut(s)	202, 205
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	26, 95, 204
Bsh1236I	CGCG	3 cut(s)	19, 240, 325
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	143, 211, 259
BsiEI	CGRYCG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	212, 233
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	239, 255
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	143, 211, 259
Bsp143I	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
BspACI	CCGC	3 cut(s)	155, 240, 302
BspANI	GGCC	3 cut(s)	143, 211, 259
BspFNI	CGCG	3 cut(s)	19, 240, 325
BspPI	GGATC	2 cut(s)	243, 326
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	286, 398
BssECI	CCNNGG	3 cut(s)	23, 66, 212
BssMI	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
BssNI	GRCGYC	2 cut(s)	30, 431
BssT1I	CCWWGG	1 cut(s)	23
BstACI	GRCGYC	2 cut(s)	30, 431
BstDSI	CCRYGG	1 cut(s)	66
BstFNI	CGCG	3 cut(s)	19, 240, 325
BstHHI	GCGC	2 cut(s)	19, 325
BstKTI	GATC	6 cut(s)	139, 226, 238, 334, 339, 361
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 320, 428
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	3 cut(s)	19, 240, 325
BstV1I	GCAGC	3 cut(s)	26, 95, 204
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	143, 211, 259
BtgI	CCRYGG	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	145, 404
CfoI	GCGC	2 cut(s)	19, 325
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	2 cut(s)	8, 420
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	7 cut(s)	47, 108, 143, 165, 211, 217, 259
CviKI_1	RGCY	7 cut(s)	47, 108, 143, 165, 211, 217, 259
DpnI	GATC	6 cut(s)	138, 225, 237, 333, 338, 360
DpnII	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
DrdI	GACNNNNNNGTC	1 cut(s)	35
DriI	GACNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	209, 257
EagI	CGGCCG	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	23
Eco52I	CGGCCG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	82, 113, 283
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	15, 109, 155, 218
Fsp4HI	GCNGC	4 cut(s)	15, 109, 155, 218
FspBI	CTAG	2 cut(s)	48, 134
GlaI	GCGC	2 cut(s)	18, 324
GluI	GCNGC	4 cut(s)	15, 109, 155, 218
HaeIII	GGCC	3 cut(s)	143, 211, 259
HapII	CCGG	2 cut(s)	212, 233
HgaI	GACGC	2 cut(s)	8, 420
HhaI	GCGC	2 cut(s)	19, 325
Hin1I	GRCGYC	2 cut(s)	30, 431
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	2 cut(s)	17, 323
HinP1I	GCGC	2 cut(s)	17, 323
HindIII	AAGCTT	1 cut(s)	163
HpaII	CCGG	2 cut(s)	212, 233
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	5 cut(s)	41, 99, 336, 343, 406
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	4 cut(s)	35, 38, 41, 436
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	111, 314, 351, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 320, 428
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	2 cut(s)	30, 431
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	2 cut(s)	17, 323
Kzo9I	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
Lsp1109I	GCAGC	3 cut(s)	26, 95, 204
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	48, 134
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	6 cut(s)	138, 225, 237, 333, 338, 360
MboI	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
MlsI	TGGCCA	1 cut(s)	259
MluNI	TGGCCA	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	19, 77
MnlI	CCTC	5 cut(s)	97, 168, 180, 183, 268
Mox20I	TGGCCA	1 cut(s)	259
Mph1103I	ATGCAT	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	127
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	2 cut(s)	212, 233
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	3 cut(s)	19, 240, 325
MwoI	GCNNNNNNNGC	3 cut(s)	217, 320, 428
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
NlaIII	CATG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	353
NspI	RCATGY	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	16, 110, 156, 219
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	2 cut(s)	145, 404
PsyI	GACNNNGTC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	127
SatI	GCNGC	4 cut(s)	15, 109, 155, 218
Sau3AI	GATC	6 cut(s)	136, 223, 235, 331, 336, 358
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	5 cut(s)	33, 167, 299, 331, 383
SfaNI	GCATC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	127
SsiI	CCGC	3 cut(s)	155, 240, 302
SspMI	CTAG	2 cut(s)	48, 134
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	3 cut(s)	14, 108, 217
Tsp45I	GTSAC	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	2 cut(s)	48, 134
ZraI	GACGTC	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.