Rmu_sc0004092.1_g000029

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004092.1
OG0001009
Physical Location & Seq
Forward (+)
109143 .. 110958
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004092.1_g000029.1.cds

Sequence Viewer

Length: 1011 bp
atgggatatatcgcccaatgggcaacctttgttaagacaattcttgctccacaagggagaaaacataaacattttgccgaacttcaagagggatatcaaaaagatgttgagcgagcatttggggtgttacaagcacgttttgcaattatacgtgggccggcacgcttttggaatcaagaagacttgagcaatatattgatggcttgcataatcatgcataacatgatcattgaggatgagagaaatgacaatcacaacttagatcagctacacaatgattacgataatgtggctcacagtccacctatagcatcagtgtcgcatgagcgtacaactccattcatggaattccttgccaatcataccgtattagagatagagaagttcattctcaactccaaaaagatcttatcgagcacctgtggaagcttcatggagatcatggtgatcctcttcattctccggccgagacgtaaacgtcttcgggatcatagtttgaggaggagacctgggatctggtatggaccggggcaccattcctttagggtttggcaggtcgttgatggcgggtcaaggttgctggtagcggcgctgcagcgcggtggcagagtcctgcttcagcgggtagcgcagcggctgatgcctaagccgctggtgtggtccacgggggtgggctggctgcttgtggcggcgggattgctcactttctgggttgatctgctggtagcgctggcttggctgttcggagttgcttttttggctactcggaatctcgggtctggcagtttggaggttgctggtatggtggctacactgggtatggatgacgtatgcattcggcgacggtcgacggctgcaacgggttcttgggctgctgggcccaactcagcccgtatgttgagttttgattctcctttgggttggatttgggatccaggagacagtgtggttgaatttctgcttaattgtcaagaggcttgccctaaagctaagggcaaaaggaaactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

336

Amino Acids

37.85

Weight (kDa)

9.7

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 600
AciI CCGC 8 cut(s) 567, 587, 600, 622, 634, 650, 689, 692
AclWI GGATC 5 cut(s) 442, 495, 521, 926, 939
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 2 cut(s) 347, 953
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 1 cut(s) 331
AfeI AGCGCT 1 cut(s) 729
AgsI TTSAA 2 cut(s) 86, 953
AjnI CCWGG 2 cut(s) 508, 934
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 3 cut(s) 268, 429, 989
AluI AGCT 3 cut(s) 268, 429, 989
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 3 cut(s) 463, 499, 933
AlwI GGATC 5 cut(s) 442, 495, 521, 926, 939
AlwNI CAGNNNCTG 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 773
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 3 cut(s) 155, 464, 878
ApaI GGGCCC 1 cut(s) 882
ApeKI GCWGC 6 cut(s) 592, 595, 631, 679, 854, 872
ApoI RAATTY 2 cut(s) 347, 953
AspLEI GCGC 4 cut(s) 592, 600, 631, 730
AspS9I GGNCC 5 cut(s) 155, 524, 660, 878, 879
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 2 cut(s) 524, 660
BaeGI GKGCMC 2 cut(s) 534, 882
BamHI GGATCC 1 cut(s) 931
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 882
BbsI GAAGAC 2 cut(s) 186, 473
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 6 cut(s) 579, 607, 643, 666, 841, 859
BccI CCATC 2 cut(s) 193, 557
BceAI ACGGC 1 cut(s) 867
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 2 cut(s) 510, 936
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 3 cut(s) 463, 499, 933
BfmI CTRYAG 2 cut(s) 306, 593
BfoI RGCGCY 2 cut(s) 593, 731
BfuAI ACCTGC 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 20
BglII AGATCT 1 cut(s) 405
Bme1390I CCNGG 3 cut(s) 510, 528, 936
Bme18I GGWCC 2 cut(s) 524, 660
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 5 cut(s) 155, 524, 660, 878, 879
BmiI GGNNCC 3 cut(s) 533, 880, 933
BmrFI CCNGG 3 cut(s) 510, 528, 936
BmrI ACTGGG 1 cut(s) 824
BmsI GCATC 2 cut(s) 320, 630
BmuI ACTGGG 1 cut(s) 824
BpiI GAAGAC 2 cut(s) 186, 473
Bpu10I CCTNAGC 2 cut(s) 645, 990
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 509, 527, 663
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 819
BseBI CCWGG 2 cut(s) 510, 936
BseDI CCNNGG 3 cut(s) 509, 527, 663
BseGI GGATG 2 cut(s) 241, 829
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 2 cut(s) 514, 517
BseSI GKGCMC 2 cut(s) 534, 882
BseX3I CGGCCG 1 cut(s) 464
BseXI GCAGC 6 cut(s) 579, 607, 643, 666, 841, 859
BseYI CCCAGC 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 600
Bsh1285I CGRYCG 2 cut(s) 467, 848
BshFI GGCC 3 cut(s) 157, 466, 880
BshNI GGYRCC 1 cut(s) 531
BsiEI CGRYCG 2 cut(s) 467, 848
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 3 cut(s) 158, 463, 527
BsmAI GTCTC 3 cut(s) 463, 499, 933
BsmBI CGTCTC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 3 cut(s) 157, 466, 880
Bso31I GGTCTC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 773
Bsp120I GGGCCC 1 cut(s) 878
Bsp1286I GDGCHC 3 cut(s) 419, 534, 882
Bsp143I GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
BspACI CCGC 8 cut(s) 567, 587, 600, 622, 634, 650, 689, 692
BspANI GGCC 3 cut(s) 157, 466, 880
BspCNI CTCAG 1 cut(s) 899
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 533, 880, 933
BspMAI CTGCAG 1 cut(s) 597
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 5 cut(s) 442, 495, 521, 926, 939
BspT107I GGYRCC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 509, 527, 663
BssMI GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
Bst2UI CCWGG 2 cut(s) 510, 936
Bst4CI ACNGT 4 cut(s) 299, 367, 846, 944
Bst6I CTCTTC 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 7 cut(s) 114, 159, 163, 205, 677, 732, 979
BstDEI CTNAG 4 cut(s) 259, 645, 886, 990
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 241, 829
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 2 cut(s) 593, 731
BstHHI GCGC 4 cut(s) 592, 600, 631, 730
BstKTI GATC 9 cut(s) 228, 265, 408, 441, 450, 490, 516, 718, 934
BstMAI GTCTC 3 cut(s) 463, 499, 933
BstMBI GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
BstMCI CGRYCG 2 cut(s) 467, 848
BstMWI GCNNNNNNNGC 8 cut(s) 20, 140, 628, 640, 649, 727, 736, 758
BstNI CCWGG 2 cut(s) 510, 936
BstSCI CCNGG 3 cut(s) 508, 526, 934
BstSFI CTRYAG 2 cut(s) 306, 593
BstSLI GKGCMC 2 cut(s) 534, 882
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 6 cut(s) 579, 607, 643, 666, 841, 859
BstV2I GAAGAC 2 cut(s) 186, 473
BstX2I RGATCY 3 cut(s) 405, 513, 931
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 3 cut(s) 405, 513, 931
BstZI CGGCCG 1 cut(s) 464
BsuRI GGCC 3 cut(s) 157, 466, 880
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 241, 829
BtsIMutI CAGTG 3 cut(s) 321, 812, 949
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 7 cut(s) 114, 159, 163, 205, 677, 732, 979
CaiI CAGNNNCTG 1 cut(s) 637
CfoI GCGC 4 cut(s) 592, 600, 631, 730
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 5 cut(s) 155, 524, 660, 878, 879
Csp6I GTAC 1 cut(s) 330
CviAII CATG 6 cut(s) 214, 223, 323, 343, 433, 442
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 4 cut(s) 259, 645, 886, 990
DpnI GATC 9 cut(s) 227, 264, 407, 440, 449, 489, 515, 717, 933
DpnII GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
DrdI GACNNNNNNGTC 1 cut(s) 477
DseDI GACNNNNNNGTC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 464
EagI CGGCCG 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
EclXI CGGCCG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 882
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 524, 660
Eco47III AGCGCT 1 cut(s) 729
Eco52I CGGCCG 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 508, 934
EcoRV GATATC 1 cut(s) 95
EcoT22I ATGCAT 2 cut(s) 219, 836
EcoT38I GRGCYC 1 cut(s) 882
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 6 cut(s) 217, 226, 326, 346, 436, 445
FatI CATG 6 cut(s) 213, 222, 322, 342, 432, 441
FauI CCCGC 3 cut(s) 560, 615, 685
FbaI TGATCA 1 cut(s) 225
FblI GTMKAC 1 cut(s) 848
FokI GGATG 2 cut(s) 248, 836
FriOI GRGCYC 1 cut(s) 882
GlaI GCGC 4 cut(s) 591, 599, 630, 729
GsaI CCCAGC 1 cut(s) 879
HaeII RGCGCY 2 cut(s) 593, 731
HaeIII GGCC 3 cut(s) 157, 466, 880
HapII CCGG 3 cut(s) 158, 463, 527
HhaI GCGC 4 cut(s) 592, 600, 631, 730
Hin1II CATG 6 cut(s) 217, 226, 326, 346, 436, 445
Hin6I GCGC 4 cut(s) 590, 598, 629, 728
HinP1I GCGC 4 cut(s) 590, 598, 629, 728
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 4 cut(s) 172, 609, 769, 908
HpaII CCGG 3 cut(s) 158, 463, 527
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 302, 476, 663, 849
Hpy188I TCNGA 2 cut(s) 746, 768
Hpy188III TCNNGA 4 cut(s) 86, 176, 485, 971
Hpy8I GTNNAC 4 cut(s) 302, 476, 663, 849
Hpy99I CGWCG 2 cut(s) 846, 853
HpyCH4III ACNGT 4 cut(s) 299, 367, 846, 944
HpyCH4IV ACGT 5 cut(s) 136, 151, 472, 478, 828
HpyCH4V TGCA 6 cut(s) 143, 207, 217, 595, 834, 857
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 140, 628, 640, 649, 727, 736, 758
HpyF3I CTNAG 4 cut(s) 259, 645, 886, 990
HpySE526I ACGT 5 cut(s) 136, 151, 472, 478, 828
Hsp92II CATG 6 cut(s) 217, 226, 326, 346, 436, 445
HspAI GCGC 4 cut(s) 590, 598, 629, 728
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 6 cut(s) 579, 607, 643, 666, 841, 859
LweI GCATC 2 cut(s) 320, 630
MaeII ACGT 5 cut(s) 136, 151, 472, 478, 828
MaeIII GTNAC 1 cut(s) 126
MalI GATC 9 cut(s) 227, 264, 407, 440, 449, 489, 515, 717, 933
MboI GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
MboII GAAGA 3 cut(s) 191, 445, 473
MflI RGATCY 3 cut(s) 405, 513, 931
MhlI GDGCHC 3 cut(s) 419, 534, 882
MluCI AATT 5 cut(s) 39, 144, 347, 953, 964
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 902
MnlI CCTC 7 cut(s) 82, 226, 461, 492, 495, 784, 967
Mph1103I ATGCAT 2 cut(s) 219, 836
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 2 cut(s) 33, 963
MslI CAYNNNNRTG 2 cut(s) 212, 668
MspA1I CMGCKG 3 cut(s) 622, 634, 652
MspI CCGG 3 cut(s) 158, 463, 527
MspR9I CCNGG 3 cut(s) 510, 528, 936
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 2 cut(s) 510, 936
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 8 cut(s) 20, 140, 628, 640, 649, 727, 736, 758
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 1 cut(s) 528
NdeII GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 6 cut(s) 217, 226, 326, 346, 436, 445
NlaIV GGNNCC 3 cut(s) 533, 880, 933
NmeAIII GCCGAG 1 cut(s) 492
NsiI ATGCAT 2 cut(s) 219, 836
OliI CACNNNNGTG 1 cut(s) 668
PctI GAATGC 1 cut(s) 834
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 172, 769, 908
PfoI TCCNGGA 1 cut(s) 934
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 508, 934
PspFI CCCAGC 1 cut(s) 875
PspGI CCWGG 2 cut(s) 508, 934
PspN4I GGNNCC 3 cut(s) 533, 880, 933
PspOMI GGGCCC 1 cut(s) 878
PspPI GGNCC 5 cut(s) 155, 524, 660, 878, 879
PstI CTGCAG 1 cut(s) 597
PstNI CAGNNNCTG 1 cut(s) 637
PsuI RGATCY 3 cut(s) 405, 513, 931
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 2 cut(s) 212, 668
SalI GTCGAC 1 cut(s) 847
SaqAI TTAA 2 cut(s) 33, 963
Sau3AI GATC 9 cut(s) 225, 262, 405, 438, 447, 487, 513, 715, 931
Sau96I GGNCC 5 cut(s) 155, 524, 660, 878, 879
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 3 cut(s) 510, 528, 936
SduI GDGCHC 3 cut(s) 419, 534, 882
SfaNI GCATC 2 cut(s) 320, 630
SfcI CTRYAG 2 cut(s) 306, 593
SinI GGWCC 2 cut(s) 524, 660
SmiMI CAYNNNNRTG 2 cut(s) 212, 668
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 39, 144, 347, 953, 964
SsiI CCGC 8 cut(s) 567, 587, 600, 622, 634, 650, 689, 692
StyD4I CCNGG 3 cut(s) 508, 526, 934
TaaI ACNGT 4 cut(s) 299, 367, 846, 944
TaiI ACGT 5 cut(s) 139, 154, 475, 481, 831
TaqI TCGA 2 cut(s) 413, 848
TasI AATT 5 cut(s) 39, 144, 347, 953, 964
TauI GCSGC 4 cut(s) 590, 637, 652, 692
TfiI GAWTC 3 cut(s) 172, 769, 908
Tru1I TTAA 2 cut(s) 33, 963
Tru9I TTAA 2 cut(s) 33, 963
TscAI CASTG 3 cut(s) 321, 819, 949
TseI GCWGC 6 cut(s) 592, 595, 631, 679, 854, 872
TspDTI ATGAA 4 cut(s) 331, 376, 421, 445
TspRI CASTG 3 cut(s) 321, 819, 949
VpaK11BI GGWCC 2 cut(s) 524, 660
XapI RAATTY 2 cut(s) 347, 953
XmiI GTMKAC 1 cut(s) 848
Zsp2I ATGCAT 2 cut(s) 219, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.