Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

65670476 .. 65670973

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCCCTCTCAAAACCCTAGCGCCACCTCCCGTAGGCTGCTTCCAGGGAGGTCTTCGACACCCCCAGTTCAAGCGATCCTCTTCATTCTCCGGCCGAGACGCAAACGCCTTCGTGATCATAGTCTGAGGAGGATATCTGGGATCTGGTATGGATCAGGGCATCATTCCTTTAGAGTTTGGCAGGTCTTTGATGGTGGGACAAGGCTGCTGGTGGCTGCGCTGCAGAGCGGTGGCAGAGTCCTACTTCAGTGGATAGCTCTGAGGCGTTTGATGTCGAAGCTACTAGTGTGGTCAACGATGGTGGTCTGGATGCATGTGGCGCCAGAGTTGCTTGGATTTTGGGTTGATTTGCTCGTAGCTCTGGCTTGGCTATTCGAAGTCGCTTTTCTGGCGGCTCAGAATCGCTGGTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

12.0

Isoelectric Point (pI)

78.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	228, 392
AclWI	GGATC	3 cut(s)	70, 149, 160
AcoI	YGGCCR	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	257, 280, 359
AluI	AGCT	3 cut(s)	257, 280, 359
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	70, 149, 160
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	4 cut(s)	37, 205, 215, 220
AspLEI	GCGC	3 cut(s)	23, 220, 322
AsuII	TTCGAA	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	24, 192, 202, 207
BccI	CCATC	2 cut(s)	185, 292
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	91
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	2 cut(s)	18, 284
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	24, 323
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	5 cut(s)	38, 206, 216, 221, 393
BlsI	GCNGC	5 cut(s)	39, 207, 217, 222, 394
Bme1390I	CCNGG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	169, 300
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	116, 251, 410
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	4 cut(s)	24, 192, 202, 207
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	319
BsiEI	CGRYCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	75, 115, 141, 152
BspACI	CCGC	2 cut(s)	228, 392
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	3 cut(s)	117, 252, 409
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	3 cut(s)	70, 149, 160
BspT104I	TTCGAA	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	75, 115, 141, 152
BssNI	GRCGYC	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	125, 260, 396
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	315
BstH2I	RGCGCY	2 cut(s)	24, 323
BstHHI	GCGC	3 cut(s)	23, 220, 322
BstKTI	GATC	4 cut(s)	78, 118, 144, 155
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	75, 115, 141, 152
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 328, 389
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	24, 192, 202, 207
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	172
CfoI	GCGC	3 cut(s)	23, 220, 322
CseI	GACGC	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	125, 260, 396
DinI	GGCGCC	1 cut(s)	321
DpnI	GATC	4 cut(s)	77, 117, 143, 154
DpnII	GATC	4 cut(s)	75, 115, 141, 152
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	321
EheI	GGCGCC	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	317
FaiI	YATR	3 cut(s)	120, 150, 315
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	38, 206, 216, 221, 393
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	38, 206, 216, 221, 393
FspBI	CTAG	2 cut(s)	18, 284
GlaI	GCGC	3 cut(s)	22, 219, 321
GluI	GCNGC	5 cut(s)	38, 206, 216, 221, 393
HaeII	RGCGCY	2 cut(s)	24, 323
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	3 cut(s)	23, 220, 322
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	3 cut(s)	21, 218, 320
HinP1I	GCGC	3 cut(s)	21, 218, 320
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	237, 400
HpaII	CCGG	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	126, 261, 399
Hpy188III	TCNNGA	2 cut(s)	113, 307
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	223, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 328, 389
HpyF3I	CTNAG	3 cut(s)	125, 260, 396
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	3 cut(s)	21, 218, 320
KasI	GGCGCC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	75, 115, 141, 152
Lsp1109I	GCAGC	4 cut(s)	24, 192, 202, 207
LweI	GCATC	2 cut(s)	169, 300
MaeI	CTAG	2 cut(s)	18, 284
MalI	GATC	4 cut(s)	77, 117, 143, 154
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	4 cut(s)	75, 115, 141, 152
MboII	GAAGA	2 cut(s)	45, 73
MflI	RGATCY	1 cut(s)	141
Mly113I	GGCGCC	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	16, 37, 42, 89, 120, 123, 255
Mph1103I	ATGCAT	1 cut(s)	315
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	319, 328, 389
NarI	GGCGCC	1 cut(s)	320
NdeII	GATC	4 cut(s)	75, 115, 141, 152
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	315
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	5 cut(s)	39, 207, 217, 222, 394
PleI	GAGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	141
SatI	GCNGC	5 cut(s)	38, 206, 216, 221, 393
Sau3AI	GATC	4 cut(s)	75, 115, 141, 152
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	29, 53, 186, 259, 282, 361
SfaNI	GCATC	2 cut(s)	169, 300
SfcI	CTRYAG	1 cut(s)	221
SfoI	GGCGCC	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	375
SpeI	ACTAGT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	228, 392
SspDI	GGCGCC	1 cut(s)	319
SspMI	CTAG	2 cut(s)	18, 284
StyD4I	CCNGG	1 cut(s)	43
TaqI	TCGA	3 cut(s)	56, 275, 375
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	400
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	4 cut(s)	37, 205, 215, 220
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	31
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	2 cut(s)	18, 284
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.