Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018911.1

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

48045 .. 50655

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018911.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgaagtcgattggggctcaaacctacaaagttgctggtattggaacaatcagattaaaggaatttgatatctcatggcattttggatttggaaggccacaagattgtgggtcaagatggaaatatgaaggttgtgaaggaagcactcgtagtgatgaaggagaaaccaatattgcagcagtccttaaagggaggcagacccataaggatcccaacacaagtttatggtggagatatgctagctcatgcatattccatattgaggtgccacctactttggaaagtagatttagtaaggacaatgagaagcaaacttggtgttctgagaatgatgcgtcaagagaaggtactatttatggtggagaattcattcaaggggatgttgctcgaggtgagttatgcaaaccattgaagatcgctcccatcaggtttggcaactttgatggagacttggattgcatgcaggctgctgcacggtgcatgtttgagggaaagaaaacaccgcgaccgatcgtcctctttcacccacaccgcgaccgatcgtcctctttccctacaccgcgatcgtcctctttcccccgtccagtaaccgacgacctctttagctctcatcgacgattgacgttgttattgggtccaccgagctccggcaagacgacgctactattggctctcgccggacgccttggaactggtcttcaggtagtggtttatcttgcatactcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.95

Weight (kDa)

8.97

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	3 cut(s)	505, 534, 562
AciI	CCGC	3 cut(s)	503, 532, 560
AclWI	GGATC	2 cut(s)	203, 216
AcsI	RAATTY	2 cut(s)	62, 365
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	682
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	262, 647
AgsI	TTSAA	2 cut(s)	374, 412
AhdI	GACNNNNNGTC	2 cut(s)	512, 541
AluBI	AGCT	3 cut(s)	243, 606, 645
AluI	AGCT	3 cut(s)	243, 606, 645
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	203, 216
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	176, 467, 470
ApoI	RAATTY	2 cut(s)	62, 365
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	404, 515
AsuNHI	GCTAGC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	2 cut(s)	19, 647
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	188, 454, 457
BccI	CCATC	3 cut(s)	111, 431, 437
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	177, 468, 471
BlsI	GCNGC	3 cut(s)	178, 469, 472
Bme18I	GGWCC	1 cut(s)	635
BmeRI	GACNNNNNGTC	2 cut(s)	512, 541
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	3 cut(s)	210, 267, 636
BmsI	GCATC	1 cut(s)	322
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	682
BsaJI	CCNNGG	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 647
Bse1I	ACTGG	2 cut(s)	584, 697
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	262, 647
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	584, 697
BseXI	GCAGC	3 cut(s)	188, 454, 457
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	3 cut(s)	505, 534, 562
Bsh1285I	CGRYCG	5 cut(s)	509, 513, 538, 542, 566
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	1 cut(s)	265
BsiEI	CGRYCG	5 cut(s)	509, 513, 538, 542, 566
BsiHKAI	GWGCWC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	648, 678
BslI	CCNNNNNNNGG	2 cut(s)	262, 647
BsmAI	GTCTC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	19, 647
Bsp143I	GATC	5 cut(s)	208, 414, 510, 539, 563
BspACI	CCGC	3 cut(s)	503, 532, 560
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	3 cut(s)	505, 534, 562
BspHI	TCATGA	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	210, 267, 636
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	203, 216
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	584, 697
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	5 cut(s)	208, 414, 510, 539, 563
BssNI	GRCGYC	1 cut(s)	682
BssT1I	CCWWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	682
BstC8I	GCNNGC	3 cut(s)	241, 461, 465
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	3 cut(s)	505, 534, 562
BstKTI	GATC	5 cut(s)	211, 417, 513, 542, 566
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	5 cut(s)	208, 414, 510, 539, 563
BstMCI	CGRYCG	5 cut(s)	509, 513, 538, 542, 566
BstNSI	RCATGY	2 cut(s)	463, 484
BstUI	CGCG	3 cut(s)	505, 534, 562
BstV1I	GCAGC	3 cut(s)	188, 454, 457
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	241, 461, 465
CciI	TCATGA	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	3 cut(s)	324, 667, 690
Csp6I	GTAC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	5 cut(s)	75, 246, 460, 481, 726
CviJI	RGCY	7 cut(s)	17, 97, 243, 467, 606, 645, 671
CviKI_1	RGCY	7 cut(s)	17, 97, 243, 467, 606, 645, 671
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	5 cut(s)	210, 416, 512, 541, 565
DpnII	GATC	5 cut(s)	208, 414, 510, 539, 563
DriI	GACNNNNNGTC	2 cut(s)	512, 541
Eam1105I	GACNNNNNGTC	2 cut(s)	512, 541
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	685
Eco24I	GRGCYC	2 cut(s)	19, 647
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	251
EcoT38I	GRGCYC	2 cut(s)	19, 647
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	5 cut(s)	78, 249, 463, 484, 729
FatI	CATG	5 cut(s)	74, 245, 459, 480, 725
Fnu4HI	GCNGC	3 cut(s)	177, 468, 471
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	2 cut(s)	19, 647
Fsp4HI	GCNGC	3 cut(s)	177, 468, 471
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	177, 468, 471
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	648, 678
HgaI	GACGC	3 cut(s)	324, 667, 690
Hin1I	GRCGYC	1 cut(s)	682
Hin1II	CATG	5 cut(s)	78, 249, 463, 484, 729
HpaII	CCGG	2 cut(s)	648, 678
HphI	GGTGA	2 cut(s)	404, 515
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	2 cut(s)	53, 325
Hpy188III	TCNNGA	3 cut(s)	114, 339, 726
Hpy8I	GTNNAC	1 cut(s)	638
Hpy99I	CGWCG	3 cut(s)	596, 618, 661
HpyAV	CCTTC	5 cut(s)	87, 122, 131, 152, 338
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	8 cut(s)	176, 249, 402, 459, 463, 473, 480, 719
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	682
Hsp92II	CATG	5 cut(s)	78, 249, 463, 484, 729
Kzo9I	GATC	5 cut(s)	208, 414, 510, 539, 563
LmnI	GCTCC	2 cut(s)	424, 650
LpnPI	CCDG	8 cut(s)	21, 412, 449, 597, 661, 678, 686, 691
Lsp1109I	GCAGC	3 cut(s)	188, 454, 457
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	5 cut(s)	210, 416, 512, 541, 565
MboI	GATC	5 cut(s)	208, 414, 510, 539, 563
MboII	GAAGA	2 cut(s)	424, 689
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	19, 647
MluCI	AATT	2 cut(s)	62, 365
MnlI	CCTC	8 cut(s)	186, 256, 383, 481, 527, 556, 580, 608
Mph1103I	ATGCAT	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	2 cut(s)	56, 186
MslI	CAYNNNNRTG	1 cut(s)	724
MspI	CCGG	2 cut(s)	648, 678
MvnI	CGCG	3 cut(s)	505, 534, 562
NdeII	GATC	5 cut(s)	208, 414, 510, 539, 563
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	5 cut(s)	78, 249, 463, 484, 729
NlaIV	GGNNCC	3 cut(s)	210, 267, 636
NsiI	ATGCAT	1 cut(s)	251
NspI	RCATGY	2 cut(s)	463, 484
PaeI	GCATGC	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	387
PagI	TCATGA	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	178, 469, 472
Ple19I	CGATCG	3 cut(s)	513, 542, 566
Psp124BI	GAGCTC	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	210, 267, 636
PspPI	GGNCC	1 cut(s)	635
PspXI	VCTCGAGB	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	208
PvuI	CGATCG	3 cut(s)	513, 542, 566
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	724
SacI	GAGCTC	1 cut(s)	647
SaqAI	TTAA	2 cut(s)	56, 186
SatI	GCNGC	3 cut(s)	177, 468, 471
Sau3AI	GATC	5 cut(s)	208, 414, 510, 539, 563
Sau96I	GGNCC	1 cut(s)	635
SduI	GDGCHC	2 cut(s)	19, 647
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	62, 365
SsiI	CCGC	3 cut(s)	503, 532, 560
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	647
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	3 cut(s)	8, 388, 613
TaqII	GACCGA	2 cut(s)	523, 552
TasI	AATT	2 cut(s)	62, 365
Tru1I	TTAA	2 cut(s)	56, 186
Tru9I	TTAA	2 cut(s)	56, 186
TseI	GCWGC	3 cut(s)	176, 467, 470
TspDTI	ATGAA	4 cut(s)	17, 141, 171, 358
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	2 cut(s)	62, 365
XceI	RCATGY	2 cut(s)	463, 484
XhoI	CTCGAG	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.