Rw6G042780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001009
Physical Location & Seq
Forward (+)
66185005 .. 66188295
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042780.1

Sequence Viewer

Length: 651 bp
ATGCCTAAGCCGCTGGTGCGGTCCACGGGGGTGGGCTGGCTGCTTGTGGCGGCGGGATTGCTCACTTTCTGGGTTGATCTGCTGGTAGCTTTGGCTTGGCTGTTCGGAGTTGCTTTTTTGGCTACTCGGCATCTCGGGTCTGGCAGTTTGGAGGTTGCTGGTATGGTGGCTACACTGGGTATGGATGAGACTTTTGCAAATACAGCAATCCATTATTTCATTACAGGAAAAGAAAATCCTGAAGCTTTGGTAAGGATGCTTGGGAAAGTTGTGTTCGTGTTGTTCTTGATCATTACATCAACAGCTGCCATAGGTGGAGGTGAAGGACGTGGCGGAGGTGGAGCAGGTGCAAGTGGAGGACGTGGCGAAGGTGGAGGAAGTAGAGGCGGTGGAGGGGGTGCAAGTAGAGGACGTGGCGTAGGTGGAGGAAGTGGAGGCGGTCGAGGGGGTGCAAGTGGAGGACGTGGCGTAGGTGGAGGAAGTGGAGGCGGTCGAGGGGGTACAAGTGGATATGTAGGAGGTGGAGGACGTGGAGGTGGTGGAGGGCATGTAAGTGGCGATGTAGGAGGTGGAGGTGGAGCTGGAAGTGGAGGCACTCTTGGTTCAGCAGCAGCTGTGCTTTGTTACATGACCTTGCAATACTTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

20.27

Weight (kDa)

10.11

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 335
AciI CCGC 8 cut(s) 11, 19, 50, 53, 333, 387, 438, 489
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 502
AjiI CACGTC 5 cut(s) 329, 362, 413, 464, 530
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 5 cut(s) 89, 245, 305, 581, 614
AluI AGCT 5 cut(s) 89, 245, 305, 581, 614
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 134
ApeKI GCWGC 4 cut(s) 40, 305, 608, 611
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 27, 292, 620, 623
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 6 cut(s) 11, 41, 51, 306, 609, 612
BlsI GCNGC 6 cut(s) 12, 42, 52, 307, 610, 613
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 5 cut(s) 329, 362, 413, 464, 530
BmgT120I GGNCC 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 139, 246
BmuI ACTGGG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 190, 261
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 4 cut(s) 27, 292, 620, 623
Bsh1285I CGRYCG 2 cut(s) 442, 493
BsiEI CGRYCG 2 cut(s) 442, 493
BsiHKCI CYCGRG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 76, 288
BspACI CCGC 8 cut(s) 11, 19, 50, 53, 333, 387, 438, 489
BspMI ACCTGC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 76, 288
BstAPI GCANNNNNTGC 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 190, 261
BstKTI GATC 2 cut(s) 79, 291
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 76, 288
BstMCI CGRYCG 2 cut(s) 442, 493
BstMWI GCNNNNNNNGC 5 cut(s) 10, 16, 119, 203, 643
BstNSI RCATGY 1 cut(s) 551
BstV1I GCAGC 4 cut(s) 27, 292, 620, 623
BstXI CCANNNNNNTGG 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 573
BtrI CACGTC 5 cut(s) 329, 362, 413, 464, 530
BtsCI GGATG 2 cut(s) 190, 261
BtsIMutI CAGTG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 501
CviAII CATG 2 cut(s) 548, 628
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 78, 290
DpnII GATC 2 cut(s) 76, 288
EciI GGCGGA 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 134
FaeI CATG 2 cut(s) 551, 631
FaiI YATR 6 cut(s) 164, 182, 311, 513, 549, 629
FatI CATG 2 cut(s) 547, 627
FauI CCCGC 1 cut(s) 46
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 6 cut(s) 11, 41, 51, 306, 609, 612
FokI GGATG 2 cut(s) 197, 268
Fsp4HI GCNGC 6 cut(s) 11, 41, 51, 306, 609, 612
GluI GCNGC 6 cut(s) 11, 41, 51, 306, 609, 612
Hin1II CATG 2 cut(s) 551, 631
HindIII AAGCTT 1 cut(s) 243
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 239, 286
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 317, 362
HpyCH4IV ACGT 5 cut(s) 328, 361, 412, 463, 529
HpyCH4V TGCA 5 cut(s) 197, 350, 401, 452, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 16, 119, 203, 643
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 5 cut(s) 328, 361, 412, 463, 529
Hsp92II CATG 2 cut(s) 551, 631
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 76, 288
LmnI GCTCC 2 cut(s) 341, 578
Lsp1109I GCAGC 4 cut(s) 27, 292, 620, 623
LweI GCATC 2 cut(s) 139, 246
MaeII ACGT 5 cut(s) 328, 361, 412, 463, 529
MaeIII GTNAC 1 cut(s) 623
MalI GATC 2 cut(s) 78, 290
MboI GATC 2 cut(s) 76, 288
MslI CAYNNNNRTG 2 cut(s) 29, 552
MspA1I CMGCKG 3 cut(s) 13, 305, 614
MwoI GCNNNNNNNGC 5 cut(s) 10, 16, 119, 203, 643
NdeII GATC 2 cut(s) 76, 288
NlaIII CATG 2 cut(s) 551, 631
NmeAIII GCCGAG 1 cut(s) 106
NspI RCATGY 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 335
PkrI GCNGC 6 cut(s) 12, 42, 52, 307, 610, 613
PspPI GGNCC 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 614
PvuII CAGCTG 2 cut(s) 305, 614
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 29, 552
SatI GCNGC 6 cut(s) 11, 41, 51, 306, 609, 612
Sau3AI GATC 2 cut(s) 76, 288
Sau96I GGNCC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 139, 246
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 29, 552
SsiI CCGC 8 cut(s) 11, 19, 50, 53, 333, 387, 438, 489
TaiI ACGT 5 cut(s) 331, 364, 415, 466, 532
TaqI TCGA 2 cut(s) 442, 493
TauI GCSGC 2 cut(s) 13, 53
TscAI CASTG 1 cut(s) 180
TseI GCWGC 4 cut(s) 40, 305, 608, 611
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 21
XceI RCATGY 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.