RchiOBHm_Chr2g0123681
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
36958346 .. 36964242
5897 bp
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UTR
Exon/CDS
Intron
PRQ49595

Sequence Viewer

Length: 336 bp
ATGCTAGTAGAACTAGCAAGAAGGGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGGTATTTTCTCGATTCCAGTTATTGAAATTCCTACTATGTTGTATCAAGATTTCTTGTTTTCATTCTCTTTCTAGTACTAACATATTTCTGACAAAGATTTTAGGGTTGGACATATGCGCTGAGACAGGATATTCTTTTGAGTTTTCTGATGCAAGCTTTCTCTGTCTTAGACACAATGGGATGTTTCTAACTTTCTATACTGACTAA

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

6.09

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 2 cut(s) 119, 205
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 2 cut(s) 83, 285
AluI AGCT 2 cut(s) 83, 285
Alw26I GTCTC 2 cut(s) 92, 245
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 65
BccI CCATC 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 92, 245
BfaI CTAG 3 cut(s) 5, 14, 201
BmcAI AGTACT 1 cut(s) 205
BmsI GCATC 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 54
BseGI GGATG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 54
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 92, 245
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 2 cut(s) 69, 123
BsrI ACTGG 1 cut(s) 145
BssMI GATC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 249, 296
BstF5I GGATG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 92, 245
BstMBI GATC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 2 cut(s) 69, 123
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 118, 204
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 2 cut(s) 70, 124
CviJI RGCY 3 cut(s) 83, 105, 285
CviKI_1 RGCY 3 cut(s) 83, 105, 285
CviQI GTAC 2 cut(s) 118, 204
DdeI CTNAG 2 cut(s) 249, 296
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
FaeI CATG 2 cut(s) 73, 127
FaiI YATR 8 cut(s) 65, 71, 125, 166, 212, 242, 244, 327
FatI CATG 2 cut(s) 69, 123
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 242
FokI GGATG 1 cut(s) 322
FspBI CTAG 3 cut(s) 5, 14, 201
GlaI GCGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 73, 127
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 1 cut(s) 141
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 219, 277
Hpy188III TCNNGA 5 cut(s) 59, 70, 124, 138, 175
HpyAV CCTTC 2 cut(s) 15, 121
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 249, 296
Hsp92II CATG 2 cut(s) 73, 127
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 158, 240
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 5, 14, 201
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MluCI AATT 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 216
NdeI CATATG 1 cut(s) 242
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 73, 127
PagI TCATGA 2 cut(s) 69, 123
PfeI GAWTC 1 cut(s) 141
RsaI GTAC 2 cut(s) 119, 205
RsaNI GTAC 2 cut(s) 118, 204
Sau3AI GATC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 205
SetI ASST 3 cut(s) 85, 132, 287
SfaNI GCATC 1 cut(s) 268
Sse9I AATT 1 cut(s) 155
SsiI CCGC 1 cut(s) 35
SspMI CTAG 3 cut(s) 5, 14, 201
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 155
TatI WGTACW 2 cut(s) 117, 203
TfiI GAWTC 1 cut(s) 141
TspDTI ATGAA 4 cut(s) 58, 86, 140, 179
XapI RAATTY 1 cut(s) 155
XspI CTAG 3 cut(s) 5, 14, 201
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.