Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

44776765 .. 44791517

Gene Structure 14753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG272500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTGTTATTGGGTCCACCGAGCTCTGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCAGTCAACAGGACTGGTTTGCGGTGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGTCGGAAACTTCTGGGATCAAAGGCGCGTACGATTACAATCCTACCCCCCTGGTATTGCAGGAGCAGAATCATGACGATGTTGCGTTAGAGGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTCGCGAAATCTGAAGCTAAGAGGATACTTACTTCGATGTCTAATTTTTGTTTTGGTTTAATTACAGAGAGGAAGCAAGCTAAAAAGGGAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

196

Amino Acids

21.9

Weight (kDa)

5.0

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	2 - 110	2.4e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccII	CGCG	2 cut(s)	374, 497
AciI	CCGC	3 cut(s)	131, 173, 254
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	2 cut(s)	62, 525
AcyI	GRCGYC	2 cut(s)	61, 140
AfaI	GTAC	2 cut(s)	338, 377
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	24, 302, 509, 572
AluI	AGCT	4 cut(s)	24, 302, 509, 572
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	188, 311
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	188, 311
BfaI	CTAG	2 cut(s)	224, 233
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	68
BsaBI	GATNNNNATC	2 cut(s)	273, 384
BsaHI	GRCGYC	2 cut(s)	61, 140
BsaJI	CCNNGG	3 cut(s)	64, 109, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	76, 170
Bse8I	GATNNNNATC	2 cut(s)	273, 384
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	64, 109, 396
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	2 cut(s)	273, 384
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	76, 170
BseRI	GAGGAG	1 cut(s)	452
Bsh1236I	CGCG	2 cut(s)	374, 497
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	57
BsiWI	CGTACG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	188, 311
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	274, 363
Bsp19I	CCATGG	1 cut(s)	109
Bsp68I	TCGCGA	1 cut(s)	497
BspACI	CCGC	3 cut(s)	131, 173, 254
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	374, 497
BspHI	TCATGA	3 cut(s)	288, 342, 418
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	76, 170
BssECI	CCNNGG	3 cut(s)	64, 109, 396
BssMI	GATC	2 cut(s)	274, 363
BssNI	GRCGYC	2 cut(s)	61, 140
BssT1I	CCWWGG	2 cut(s)	64, 109
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	187, 216
Bst6I	CTCTTC	2 cut(s)	235, 438
BstACI	GRCGYC	2 cut(s)	61, 140
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	2 cut(s)	374, 497
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	277, 366
BstMAI	GTCTC	2 cut(s)	188, 311
BstMBI	GATC	2 cut(s)	274, 363
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstUI	CGCG	2 cut(s)	374, 497
BstV2I	GAAGAC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	454
BtuMI	TCGCGA	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	570
CciI	TCATGA	3 cut(s)	288, 342, 418
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	2 cut(s)	46, 69
Csp6I	GTAC	2 cut(s)	337, 376
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	4 cut(s)	110, 289, 343, 419
CviJI	RGCY	9 cut(s)	24, 50, 108, 114, 146, 302, 324, 509, 572
CviKI_1	RGCY	9 cut(s)	24, 50, 108, 114, 146, 302, 324, 509, 572
CviQI	GTAC	2 cut(s)	337, 376
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	2 cut(s)	276, 365
DpnII	GATC	2 cut(s)	274, 363
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	235, 438
EarI	CTCTTC	2 cut(s)	235, 438
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	64, 109
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	62, 525
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	64, 109
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	64, 109
FaeI	CATG	4 cut(s)	113, 292, 346, 422
FaiI	YATR	9 cut(s)	100, 111, 150, 219, 221, 284, 290, 344, 420
FatI	CATG	4 cut(s)	109, 288, 342, 418
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	224, 233
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	2 cut(s)	46, 69
HhaI	GCGC	1 cut(s)	374
Hin1I	GRCGYC	2 cut(s)	61, 140
Hin1II	CATG	4 cut(s)	113, 292, 346, 422
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	196, 415
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	17, 158
Hpy188I	TCNGA	3 cut(s)	81, 352, 505
Hpy188III	TCNNGA	6 cut(s)	200, 278, 289, 343, 419, 496
Hpy8I	GTNNAC	2 cut(s)	17, 158
Hpy99I	CGWCG	2 cut(s)	40, 145
HpyCH4III	ACNGT	2 cut(s)	187, 216
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	209, 406
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	2 cut(s)	61, 140
Hsp92II	CATG	4 cut(s)	113, 292, 346, 422
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	274, 363
LmnI	GCTCC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	224, 233
MaeII	ACGT	1 cut(s)	140
MalI	GATC	2 cut(s)	276, 365
MboI	GATC	2 cut(s)	274, 363
MboII	GAAGA	3 cut(s)	68, 252, 455
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	4 cut(s)	459, 488, 535, 552
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	6 cut(s)	129, 430, 433, 439, 507, 555
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	116, 470, 551
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	374, 497
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	274, 363
NlaIII	CATG	4 cut(s)	113, 292, 346, 422
NlaIV	GGNNCC	1 cut(s)	15
NruI	TCGCGA	1 cut(s)	497
PagI	TCATGA	3 cut(s)	288, 342, 418
PfeI	GAWTC	1 cut(s)	415
Pfl23II	CGTACG	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	497
RsaI	GTAC	2 cut(s)	338, 377
RsaNI	GTAC	2 cut(s)	337, 376
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	116, 470, 551
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	274, 363
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	6 cut(s)	26, 91, 143, 304, 511, 574
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	459, 488, 535, 552
SsiI	CCGC	3 cut(s)	131, 173, 254
SspMI	CTAG	2 cut(s)	224, 233
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	64, 109
TaaI	ACNGT	2 cut(s)	187, 216
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	459, 488, 535, 552
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	116, 470, 551
Tru9I	TTAA	3 cut(s)	116, 470, 551
TspDTI	ATGAA	4 cut(s)	277, 305, 359, 492
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	488
XspI	CTAG	2 cut(s)	224, 233
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.