RLG00000022633
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
5844610 .. 5846372
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022633

Sequence Viewer

Length: 435 bp
ATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTTGGCTTATGTCAGTCAACAGGACTGGTTTGCAGTGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGCTGAAGGCATCTTTGCAAGGTTCATCAACGGGTGATATATTGGATCCAGAAGCACATTTTTGTTGGGATTTGGCATTCAAGGAGAGTAGGCATTCTACTCTATGTAATCTTCGCAGAGATCTTGTTTTGGGGCATTGTCGCTGA

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

5.79

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 197
AclWI GGATC 2 cut(s) 329, 342
AcoI YGGCCR 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 154, 370
AluBI AGCT 2 cut(s) 245, 292
AluI AGCT 2 cut(s) 245, 292
Alw26I GTCTC 2 cut(s) 107, 254
AlwI GGATC 2 cut(s) 329, 342
AoxI GGCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 227, 335
BalI TGGCCA 1 cut(s) 27
BamHI GGATCC 1 cut(s) 334
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 107, 254
BfaI CTAG 2 cut(s) 167, 176
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 216
BseNI ACTGG 1 cut(s) 89
BshFI GGCC 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 107, 254
BsmI GAATGC 2 cut(s) 365, 382
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 217, 334, 409
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 50, 197
BspANI GGCC 1 cut(s) 27
BspHI TCATGA 2 cut(s) 231, 285
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 329, 342
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 217, 334, 409
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 106, 135
Bst6I CTCTTC 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 28
BstKTI GATC 3 cut(s) 220, 337, 412
BstMAI GTCTC 2 cut(s) 107, 254
BstMBI GATC 3 cut(s) 217, 334, 409
BstX2I RGATCY 2 cut(s) 334, 409
BstYI RGATCY 2 cut(s) 334, 409
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
CciI TCATGA 2 cut(s) 231, 285
Csp6I GTAC 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 3 cut(s) 29, 232, 286
CviJI RGCY 6 cut(s) 27, 33, 65, 245, 267, 292
CviKI_1 RGCY 6 cut(s) 27, 33, 65, 245, 267, 292
CviQI GTAC 1 cut(s) 280
DpnI GATC 3 cut(s) 219, 336, 411
DpnII GATC 3 cut(s) 217, 334, 409
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 32, 235, 289
FatI CATG 3 cut(s) 28, 231, 285
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 167, 176
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 3 cut(s) 32, 235, 289
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HinfI GANTC 2 cut(s) 115, 150
HphI GGTGA 2 cut(s) 227, 335
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 5 cut(s) 119, 221, 232, 286, 338
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 106, 135
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 92, 128, 307
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 3 cut(s) 32, 235, 289
Kzo9I GATC 3 cut(s) 217, 334, 409
LpnPI CCDG 4 cut(s) 65, 70, 114, 351
LweI GCATC 1 cut(s) 308
MaeI CTAG 2 cut(s) 167, 176
MaeII ACGT 1 cut(s) 59
MalI GATC 3 cut(s) 219, 336, 411
MboI GATC 3 cut(s) 217, 334, 409
MboII GAAGA 2 cut(s) 195, 392
MflI RGATCY 2 cut(s) 334, 409
MlsI TGGCCA 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 365, 382
NcoI CCATGG 1 cut(s) 28
NdeII GATC 3 cut(s) 217, 334, 409
NlaIII CATG 3 cut(s) 32, 235, 289
NlaIV GGNNCC 1 cut(s) 336
PagI TCATGA 2 cut(s) 231, 285
PctI GAATGC 2 cut(s) 365, 382
PfeI GAWTC 1 cut(s) 150
PflFI GACNNNGTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 2 cut(s) 334, 409
PsyI GACNNNGTC 1 cut(s) 135
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 3 cut(s) 217, 334, 409
SchI GAGTC 1 cut(s) 109
SetI ASST 6 cut(s) 10, 62, 145, 247, 294, 313
SfaNI GCATC 1 cut(s) 308
SsiI CCGC 2 cut(s) 50, 197
SspMI CTAG 2 cut(s) 167, 176
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 106, 135
TaiI ACGT 1 cut(s) 62
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 4 cut(s) 220, 248, 302, 303
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 135
XspI CTAG 2 cut(s) 167, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.