Rh7AG212400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001009
Physical Location & Seq
Forward (+)
19577314 .. 19577586
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG212400.1

Sequence Viewer

Length: 273 bp
ATGAGGAGGAGACTCAGTGCCTCAGTCCGACAGAGACCATGGTCAGATTGCAATTGGAAGTGGGAGGAGACCATGGTTGATAGGAGAAGAGAGACACAGAGGACGAGGAGGAGACCTCAGTGTTTCGGACCTCGACACCGTCACTGCCGCAAGCCCGATCTATCGGATCCAGCCTTTGTCACCCCTCATTGCTTATTGGATCTATCAAGGGATCGAGGGATGCTTGAGTATGTTTGGATAGAGGAGATTTGGAGAGGTTGGTTTTCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

11.23

Weight (kDa)

10.6

Isoelectric Point (pI)

70.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AclWI GGATC 4 cut(s) 161, 174, 207, 219
AgsI TTSAA 1 cut(s) 267
Alw26I GTCTC 5 cut(s) 4, 28, 62, 86, 106
AlwI GGATC 4 cut(s) 161, 174, 207, 219
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 128
BamHI GGATCC 1 cut(s) 166
BcoDI GTCTC 5 cut(s) 4, 28, 62, 86, 106
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpuEI CTTGAG 1 cut(s) 245
BsaI GGTCTC 3 cut(s) 28, 62, 106
BsaJI CCNNGG 2 cut(s) 38, 72
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 38, 72
BseGI GGATG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 3 cut(s) 28, 36, 131
BseRI GAGGAG 6 cut(s) 19, 22, 80, 121, 124, 257
BsmAI GTCTC 5 cut(s) 4, 28, 62, 86, 106
Bso31I GGTCTC 3 cut(s) 28, 62, 106
Bsp143I GATC 4 cut(s) 157, 166, 199, 211
Bsp19I CCATGG 2 cut(s) 38, 72
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 3 cut(s) 27, 35, 130
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 4 cut(s) 161, 174, 207, 219
BspTNI GGTCTC 3 cut(s) 28, 62, 106
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 38, 72
BssMI GATC 4 cut(s) 157, 166, 199, 211
BssT1I CCWWGG 2 cut(s) 38, 72
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 14, 22, 117
BstDSI CCRYGG 2 cut(s) 38, 72
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 4 cut(s) 160, 169, 202, 214
BstMAI GTCTC 5 cut(s) 4, 28, 62, 86, 106
BstMBI GATC 4 cut(s) 157, 166, 199, 211
BstPAI GACNNNNGTC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 166, 199
BstYI RGATCY 2 cut(s) 166, 199
BtgI CCRYGG 2 cut(s) 38, 72
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 22, 125, 142
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 2 cut(s) 39, 73
CviJI RGCY 2 cut(s) 154, 173
CviKI_1 RGCY 2 cut(s) 154, 173
DdeI CTNAG 3 cut(s) 14, 22, 117
DpnI GATC 4 cut(s) 159, 168, 201, 213
DpnII GATC 4 cut(s) 157, 166, 199, 211
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 38, 72
Eco31I GGTCTC 3 cut(s) 28, 62, 106
Eco47I GGWCC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 38, 72
ErhI CCWWGG 2 cut(s) 38, 72
FaeI CATG 2 cut(s) 42, 76
FaiI YATR 3 cut(s) 40, 74, 231
FatI CATG 2 cut(s) 38, 72
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 42, 76
HinfI GANTC 1 cut(s) 12
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 29, 46, 128, 166
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 51
HpyF3I CTNAG 3 cut(s) 14, 22, 117
Hsp92II CATG 2 cut(s) 42, 76
Kzo9I GATC 4 cut(s) 157, 166, 199, 211
LpnPI CCDG 1 cut(s) 183
LweI GCATC 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 140, 178
MalI GATC 4 cut(s) 159, 168, 201, 213
MboI GATC 4 cut(s) 157, 166, 199, 211
MboII GAAGA 1 cut(s) 99
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 2 cut(s) 166, 199
MluCI AATT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 52
MunI CAATTG 1 cut(s) 52
NcoI CCATGG 2 cut(s) 38, 72
NdeII GATC 4 cut(s) 157, 166, 199, 211
NlaIII CATG 2 cut(s) 42, 76
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 140, 178
PflFI GACNNNGTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PshAI GACNNNNGTC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 2 cut(s) 166, 199
PsyI GACNNNGTC 1 cut(s) 138
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 4 cut(s) 157, 166, 199, 211
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 6
SetI ASST 3 cut(s) 118, 133, 259
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 52
SsiI CCGC 1 cut(s) 148
StyI CCWWGG 2 cut(s) 38, 72
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 133, 214
TasI AATT 1 cut(s) 52
TauI GCSGC 1 cut(s) 150
TscAI CASTG 3 cut(s) 22, 125, 149
TseFI GTSAC 2 cut(s) 140, 178
Tsp45I GTSAC 2 cut(s) 140, 178
TspRI CASTG 3 cut(s) 22, 125, 149
Tth111I GACNNNGTC 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.