RchiOBHm_Chr3g0479491

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001009
Physical Location & Seq
Forward (+)
25358147 .. 25358368
222 bp
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UTR
Exon/CDS
Intron
PRQ44457

Sequence Viewer

Length: 222 bp
ATGGCATGTGAGCTGATTCTGGGATTAGCATGCTGCTGTCCTAACCCACATCAGAGGCCTTCCATGAGAACTGTCATTAAGGTTCTTACAAGGGAAGCAGATTCACCATTCTCGCCCACCGAAGGACCTGCTTTTGTGTGGCCAGCCAAGCCTCAATCATTCCGAGAGACAACTTTGGATGGAAGTCAGATTACTACATTCACAGAACTCTCTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

73

Amino Acids

8.02

Weight (kDa)

6.53

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 2 cut(s) 56, 140
ApeKI GCWGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 96
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 58, 142
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 58, 142
BspANI GGCC 2 cut(s) 58, 142
BspMI ACCTGC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 31, 144
BstF5I GGATG 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 9, 33
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 58, 142
BtsCI GGATG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 31, 144
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 3 cut(s) 6, 30, 64
CviJI RGCY 5 cut(s) 13, 58, 142, 146, 151
CviKI_1 RGCY 5 cut(s) 13, 58, 142, 146, 151
EaeI YGGCCR 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 125
FaeI CATG 3 cut(s) 9, 33, 67
FaiI YATR 3 cut(s) 7, 31, 65
FatI CATG 3 cut(s) 5, 29, 63
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 2 cut(s) 58, 142
Hin1II CATG 3 cut(s) 9, 33, 67
HinfI GANTC 2 cut(s) 16, 101
HphI GGTGA 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 54, 164, 189
Hpy188III TCNNGA 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 69, 116
HpyCH4III ACNGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92II CATG 3 cut(s) 9, 33, 67
LpnPI CCDG 4 cut(s) 5, 141, 156, 198
Lsp1109I GCAGC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 142
MluNI TGGCCA 1 cut(s) 142
MnlI CCTC 2 cut(s) 48, 162
Mox20I TGGCCA 1 cut(s) 142
MscI TGGCCA 1 cut(s) 142
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 148
NlaIII CATG 3 cut(s) 9, 33, 67
NspI RCATGY 2 cut(s) 9, 33
PaeI GCATGC 1 cut(s) 33
PceI AGGCCT 1 cut(s) 58
PfeI GAWTC 2 cut(s) 16, 101
PkrI GCNGC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 125
SetI ASST 3 cut(s) 15, 84, 130
SinI GGWCC 1 cut(s) 125
SphI GCATGC 1 cut(s) 33
SseBI AGGCCT 1 cut(s) 58
StuI AGGCCT 1 cut(s) 58
TaaI ACNGT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 16, 101
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 2 cut(s) 9, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.