Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

11658132 .. 11659742

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCTCGACCTGCCGAAGCCGGAGCTGCAGTGGCCGTCTGTCCTTTCTCTTTCCACGGGCCTCCCCTTCTCAGCCCCTCTCTTCGACCGTCGAGGCGGCGACTGCCATCGCTCTCATCGACGGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCCCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCACTCAACAGGACTGGTTTGCGGCGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGGGTTGGACATATGCGTTGATACGTTGGTAGGAGATGAAATGCTTAAAGGTATATCAGGGGGCCAAAAGAAGCGGCTTACTACAGGTGCATACTTGGTGTTTCTAGAAAGGTATAGACTAGGTATAAGCTCTGCGTGTTGGGTAGGAAGGATAGTTTCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

206

Amino Acids

22.28

Weight (kDa)

10.42

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	60 - 179	3.7e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AatII	GACGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	19
AciI	CCGC	5 cut(s)	97, 347, 389, 392, 529
AcoI	YGGCCR	2 cut(s)	33, 322
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	277, 356
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	210, 451
AluBI	AGCT	2 cut(s)	26, 585
AluI	AGCT	2 cut(s)	26, 585
Alw26I	GTCTC	2 cut(s)	9, 404
AoxI	GGCC	4 cut(s)	33, 59, 322, 517
ApeKI	GCWGC	1 cut(s)	26
AspS9I	GGNCC	3 cut(s)	59, 230, 517
AsuC2I	CCSGG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	3 cut(s)	20, 138, 158
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	9, 404
BfaI	CTAG	2 cut(s)	560, 575
BfmI	CTRYAG	2 cut(s)	27, 537
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	5 cut(s)	27, 98, 347, 390, 530
BlsI	GCNGC	5 cut(s)	28, 99, 348, 391, 531
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	59, 230, 517
BmiI	GGNNCC	2 cut(s)	231, 518
BmrFI	CCNGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	277, 356
BsaJI	CCNNGG	4 cut(s)	55, 241, 280, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	292, 386
BseDI	CCNNGG	4 cut(s)	55, 241, 280, 325
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	85, 122
BseNI	ACTGG	2 cut(s)	292, 386
BseXI	GCAGC	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	35, 61, 324, 519
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	21, 243, 273
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	9, 404
BsnI	GGCC	4 cut(s)	35, 61, 324, 519
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	5 cut(s)	97, 347, 389, 392, 529
BspANI	GGCC	4 cut(s)	35, 61, 324, 519
BspCNI	CTCAG	2 cut(s)	84, 123
BspLI	GGNNCC	2 cut(s)	231, 518
BspMAI	CTGCAG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	292, 386
BssECI	CCNNGG	4 cut(s)	55, 241, 280, 325
BssNI	GRCGYC	2 cut(s)	277, 356
BssT1I	CCWWGG	2 cut(s)	280, 325
Bst4CI	ACNGT	3 cut(s)	90, 403, 432
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	277, 356
BstDEI	CTNAG	2 cut(s)	71, 131
BstDSI	CCRYGG	2 cut(s)	55, 325
BstMAI	GTCTC	2 cut(s)	9, 404
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 32, 103, 142, 162
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	2 cut(s)	27, 537
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	4 cut(s)	35, 61, 324, 519
BtgI	CCRYGG	2 cut(s)	55, 325
BtgZI	GCGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	59, 230, 517
CseI	GACGC	2 cut(s)	262, 285
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	71, 131
EaeI	YGGCCR	2 cut(s)	33, 322
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	280, 325
Eco24I	GRGCYC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	280, 325
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	280, 325
FaeI	CATG	1 cut(s)	329
FatI	CATG	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	467
Fnu4HI	GCNGC	5 cut(s)	27, 98, 347, 390, 530
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	27, 98, 347, 390, 530
FspBI	CTAG	2 cut(s)	560, 575
GluI	GCNGC	5 cut(s)	27, 98, 347, 390, 530
HaeIII	GGCC	4 cut(s)	35, 61, 324, 519
HapII	CCGG	3 cut(s)	21, 243, 273
HgaI	GACGC	2 cut(s)	262, 285
Hin1I	GRCGYC	2 cut(s)	277, 356
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	2 cut(s)	412, 447
HpaII	CCGG	3 cut(s)	21, 243, 273
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	132, 297
Hpy188III	TCNNGA	4 cut(s)	6, 210, 416, 560
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	4 cut(s)	94, 124, 256, 361
HpyAV	CCTTC	3 cut(s)	77, 216, 597
HpyCH4III	ACNGT	3 cut(s)	90, 403, 432
HpyCH4IV	ACGT	3 cut(s)	218, 356, 479
HpyCH4V	TGCA	3 cut(s)	29, 425, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 32, 103, 142, 162
HpyF3I	CTNAG	2 cut(s)	71, 131
HpySE526I	ACGT	3 cut(s)	218, 356, 479
Hsp92I	GRCGYC	2 cut(s)	277, 356
Hsp92II	CATG	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	23, 153
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	560, 575
MaeII	ACGT	3 cut(s)	218, 356, 479
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	74, 284
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	2 cut(s)	137, 167
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	2 cut(s)	424, 441
MnlI	CCTC	5 cut(s)	72, 87, 88, 126, 345
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	5 cut(s)	149, 170, 332, 501, 619
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	3 cut(s)	21, 243, 273
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	26, 32, 103, 142, 162
NciI	CCSGG	1 cut(s)	243
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	467
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	231, 518
NmuCI	GTSAC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	447
PflFI	GACNNNGTC	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	28, 99, 348, 391, 531
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PsiI	TTATAA	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	231, 518
PspPI	GGNCC	3 cut(s)	59, 230, 517
PstI	CTGCAG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	432
SaqAI	TTAA	5 cut(s)	149, 170, 332, 501, 619
SatI	GCNGC	5 cut(s)	27, 98, 347, 390, 530
Sau96I	GGNCC	3 cut(s)	59, 230, 517
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	242
SfcI	CTRYAG	2 cut(s)	27, 537
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	2 cut(s)	137, 167
SsiI	CCGC	5 cut(s)	97, 347, 389, 392, 529
SspMI	CTAG	2 cut(s)	560, 575
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	280, 325
TaaI	ACNGT	3 cut(s)	90, 403, 432
TaiI	ACGT	3 cut(s)	221, 359, 482
TaqI	TCGA	5 cut(s)	7, 85, 92, 119, 614
TasI	AATT	2 cut(s)	137, 167
TauI	GCSGC	4 cut(s)	100, 349, 392, 532
TfiI	GAWTC	1 cut(s)	447
Tru1I	TTAA	5 cut(s)	149, 170, 332, 501, 619
Tru9I	TTAA	5 cut(s)	149, 170, 332, 501, 619
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	559
XspI	CTAG	2 cut(s)	560, 575
ZraI	GACGTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.