Rmu_sc0001018.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001018.1
OG0001009
Physical Location & Seq
Forward (+)
112754 .. 115747
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001018.1_g000026.1.cds

Sequence Viewer

Length: 618 bp
atgatgagagtcgagagcgagagcgtgccctctcaaaaccctagcgccgcctcttgtaggctgcttccagggaggtcttcggcacctccagtcccaggtttctctcaacgcttatgccttgaggcggatcggttccattctcgatgtaaggaatggtgggttgcggcagtggttgtgagccccggaaaatttatcgagcttaaattgagatcgttcgacaagttatttatttacgatcttgcttggggcgttacagtggtgatcctcttcattctccggccgagacgtaaacgtcttcgggatcatagtttgaggaggagacctgggatctggtatggaccggggcaccattcctttagggtttggcaggtcgtggatggcgggtcaaggttgttggtggcggcgctgcagcgcggtggcagagtcctggcggcactgatgcctaagccgctggtgcggtccacgggggtgggctggctgcttatggcggcgggattgctcactttctgggttgatctgctggtagcgctggcttggctgttcggagttgcttttttggcatctcgggtctggcagtttggaggttgctggtatggtggctacactgggtatggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.01

Weight (kDa)

10.85

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 82, 345
AccII CGCG 1 cut(s) 414
AclWI GGATC 4 cut(s) 135, 256, 309, 335
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 188
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 3 cut(s) 57, 95, 124
AjnI CCWGG 4 cut(s) 67, 94, 322, 426
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 277, 313
AlwI GGATC 4 cut(s) 135, 256, 309, 335
Ama87I CYCGRG 1 cut(s) 564
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 4 cut(s) 61, 406, 409, 478
ApoI RAATTY 1 cut(s) 188
AspLEI GCGC 4 cut(s) 47, 406, 414, 529
AspS9I GGNCC 2 cut(s) 338, 459
AsuC2I CCSGG 2 cut(s) 183, 342
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 2 cut(s) 338, 459
BaeGI GKGCMC 2 cut(s) 30, 348
BanI GGYRCC 2 cut(s) 82, 345
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 69, 287
BbvI GCAGC 4 cut(s) 48, 393, 421, 465
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 4 cut(s) 69, 96, 324, 428
BcnI CCSGG 2 cut(s) 183, 342
BcoDI GTCTC 2 cut(s) 277, 313
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 407
BfoI RGCGCY 3 cut(s) 48, 407, 530
BfuAI ACCTGC 1 cut(s) 358
Bme1390I CCNGG 6 cut(s) 69, 96, 183, 324, 342, 428
Bme18I GGWCC 2 cut(s) 338, 459
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 2 cut(s) 338, 459
BmiI GGNNCC 3 cut(s) 84, 134, 347
BmrFI CCNGG 6 cut(s) 69, 96, 183, 324, 342, 428
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 2 cut(s) 429, 569
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 69, 287
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 183, 342
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 6 cut(s) 68, 94, 181, 323, 341, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 95, 124
Bse1I ACTGG 2 cut(s) 89, 610
BseBI CCWGG 4 cut(s) 69, 96, 324, 428
BseDI CCNNGG 6 cut(s) 68, 94, 181, 323, 341, 462
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 3 cut(s) 57, 95, 124
BseNI ACTGG 2 cut(s) 89, 610
BseRI GAGGAG 2 cut(s) 328, 331
BseSI GKGCMC 2 cut(s) 30, 348
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 4 cut(s) 48, 393, 421, 465
Bsh1236I CGCG 1 cut(s) 414
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 2 cut(s) 82, 345
BsiEI CGRYCG 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 3 cut(s) 183, 277, 341
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 57, 95, 124
BsmAI GTCTC 2 cut(s) 277, 313
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 3 cut(s) 30, 182, 348
Bsp143I GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
BspANI GGCC 1 cut(s) 280
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 84, 134, 347
BspMAI CTGCAG 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 4 cut(s) 135, 256, 309, 335
BspT107I GGYRCC 2 cut(s) 82, 345
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 2 cut(s) 89, 610
BssECI CCNNGG 6 cut(s) 68, 94, 181, 323, 341, 462
BssMI GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
Bst2UI CCWGG 4 cut(s) 69, 96, 324, 428
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 26, 476, 531
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 462
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 414
BstH2I RGCGCY 3 cut(s) 48, 407, 530
BstHHI GCGC 4 cut(s) 47, 406, 414, 529
BstKTI GATC 7 cut(s) 130, 212, 238, 264, 304, 330, 517
BstMAI GTCTC 2 cut(s) 277, 313
BstMBI GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 448, 454, 526, 535, 557
BstNI CCWGG 4 cut(s) 69, 96, 324, 428
BstSCI CCNGG 6 cut(s) 67, 94, 181, 322, 340, 426
BstSFI CTRYAG 1 cut(s) 407
BstSLI GKGCMC 2 cut(s) 30, 348
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 48, 393, 421, 465
BstV2I GAAGAC 2 cut(s) 69, 287
BstX2I RGATCY 1 cut(s) 327
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 4 cut(s) 174, 261, 434, 603
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 26, 476, 531
CfoI GCGC 4 cut(s) 47, 406, 414, 529
Cfr13I GGNCC 2 cut(s) 338, 459
DdeI CTNAG 1 cut(s) 444
DpnI GATC 7 cut(s) 129, 211, 237, 263, 303, 329, 516
DpnII GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 140
EclXI CGGCCG 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 338, 459
Eco47III AGCGCT 1 cut(s) 528
Eco52I CGGCCG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoRII CCWGG 4 cut(s) 67, 94, 322, 426
EcoT38I GRGCYC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 277
FaiI YATR 6 cut(s) 115, 306, 336, 485, 594, 612
FaqI GGGAC 1 cut(s) 77
FauI CCCGC 2 cut(s) 374, 484
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 182
FspBI CTAG 1 cut(s) 42
GlaI GCGC 4 cut(s) 46, 405, 413, 528
GsuI CTGGAG 1 cut(s) 72
HaeII RGCGCY 3 cut(s) 48, 407, 530
HaeIII GGCC 1 cut(s) 280
HapII CCGG 3 cut(s) 183, 277, 341
HhaI GCGC 4 cut(s) 47, 406, 414, 529
Hin6I GCGC 4 cut(s) 45, 404, 412, 527
HinP1I GCGC 4 cut(s) 45, 404, 412, 527
HinfI GANTC 2 cut(s) 9, 423
HpaII CCGG 3 cut(s) 183, 277, 341
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 290, 462
Hpy188I TCNGA 1 cut(s) 545
Hpy188III TCNNGA 3 cut(s) 13, 141, 299
Hpy8I GTNNAC 2 cut(s) 290, 462
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 286, 292
HpyCH4V TGCA 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 5 cut(s) 448, 454, 526, 535, 557
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 286, 292
HspAI GCGC 4 cut(s) 45, 404, 412, 527
Kzo9I GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
Lsp1109I GCAGC 4 cut(s) 48, 393, 421, 465
LweI GCATC 2 cut(s) 429, 569
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 286, 292
MaeIII GTNAC 1 cut(s) 250
MalI GATC 7 cut(s) 129, 211, 237, 263, 303, 329, 516
MboI GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
MboII GAAGA 3 cut(s) 69, 259, 287
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 3 cut(s) 30, 182, 348
MluCI AATT 2 cut(s) 188, 203
MlyI GAGTC 2 cut(s) 18, 432
MnlI CCTC 9 cut(s) 40, 61, 66, 96, 115, 275, 306, 309, 575
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 3 cut(s) 183, 277, 341
MspR9I CCNGG 6 cut(s) 69, 96, 183, 324, 342, 428
MvaI CCWGG 4 cut(s) 69, 96, 324, 428
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 448, 454, 526, 535, 557
NciI CCSGG 2 cut(s) 183, 342
NdeII GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
NlaIV GGNNCC 3 cut(s) 84, 134, 347
NmeAIII GCCGAG 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 467
PleI GAGTC 2 cut(s) 17, 431
PpsI GAGTC 2 cut(s) 17, 431
Psp6I CCWGG 4 cut(s) 67, 94, 322, 426
PspGI CCWGG 4 cut(s) 67, 94, 322, 426
PspN4I GGNNCC 3 cut(s) 84, 134, 347
PspPI GGNCC 2 cut(s) 338, 459
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 7 cut(s) 127, 209, 235, 261, 301, 327, 514
Sau96I GGNCC 2 cut(s) 338, 459
SchI GAGTC 2 cut(s) 18, 432
ScrFI CCNGG 6 cut(s) 69, 96, 183, 324, 342, 428
SduI GDGCHC 3 cut(s) 30, 182, 348
SfaNI GCATC 2 cut(s) 429, 569
SfcI CTRYAG 1 cut(s) 407
SinI GGWCC 2 cut(s) 338, 459
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 188, 203
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 6 cut(s) 67, 94, 181, 322, 340, 426
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 289, 295
TaqI TCGA 4 cut(s) 12, 142, 195, 216
TasI AATT 2 cut(s) 188, 203
TauI GCSGC 6 cut(s) 50, 167, 404, 434, 451, 491
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 4 cut(s) 174, 261, 441, 610
TseI GCWGC 4 cut(s) 61, 406, 409, 478
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 4 cut(s) 174, 261, 441, 610
VpaK11BI GGWCC 2 cut(s) 338, 459
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.