Rh1CG235800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001009
Physical Location & Seq
Reverse (-)
49317515 .. 49321313
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG235800.1

Sequence Viewer

Length: 528 bp
ATGTCCCTTGGAACCGATTGTGAGAGGGATAAGCAGAGGAGGGATGGTGGAATGCCGGTGGGGCGTCAGGATCTCCCTCATCTTAGGGCATCGACAAAAGGAGATTTGGGGTTGGCTGGGTGGGCGGTTTGGACTACAGGGGTGCAATCTATTTTGATTACAGATCGATTTGGCGATGGCCAGTGGAAGGGCGGTGGCTGGTGGGTGTCATCAGTTTTGGGCCACCTCAGATATGCTTTTGGATGGTCAAGTGATGTCGGGTTTTGGCAGCCAGGGAGTGGAAGTGACGGGGACTCTGGTAGAGGTGCGACGAATCAAGTAAAAGATTCTTTCAAGGCAAAGAACATTAACAACAGTTCCAACAAAACTAACCAGATTGATCACACAATTGCTATTTACACAAAACCCTTTACTTATCTTCCAAATGAGAAAATTATATATACGCAACTGGGCCCTCCCAACTCAAAAATGAACTGGGTTCAGAGCAATGAAGGTGATCATAAACCGGAAAAGAGTTCAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.29

Weight (kDa)

8.99

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AciI CCGC 2 cut(s) 125, 192
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 187, 278
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 271
AlwI GGATC 1 cut(s) 78
AoxI GGCC 3 cut(s) 178, 220, 451
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 1 cut(s) 268
AspS9I GGNCC 3 cut(s) 220, 451, 452
AsuHPI GGTGA 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 180
BanII GRGCYC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 280
BccI CCATC 3 cut(s) 38, 170, 237
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 2 cut(s) 379, 496
BfmI CTRYAG 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 220, 451, 452
BmiI GGNNCC 2 cut(s) 13, 453
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 2 cut(s) 458, 484
BmsI GCATC 1 cut(s) 98
BmuI ACTGGG 2 cut(s) 458, 484
Bsa29I ATCGAT 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 7, 272
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 278
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 181, 453, 479
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 7, 272
BseGI GGATG 2 cut(s) 49, 248
BseLI CCNNNNNNNGG 2 cut(s) 187, 278
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 3 cut(s) 181, 453, 479
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 3 cut(s) 180, 222, 453
BshVI ATCGAT 1 cut(s) 166
BsiSI CCGG 2 cut(s) 56, 506
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 187, 278
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 3 cut(s) 180, 222, 453
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 455
Bsp143I GATC 4 cut(s) 70, 163, 379, 496
BspACI CCGC 2 cut(s) 125, 192
BspANI GGCC 3 cut(s) 180, 222, 453
BspCNI CTCAG 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 13, 453
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 3 cut(s) 181, 453, 479
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 7, 272
BssMI GATC 4 cut(s) 70, 163, 379, 496
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 83, 227
BstF5I GGATG 2 cut(s) 49, 248
BstKTI GATC 4 cut(s) 73, 166, 382, 499
BstMBI GATC 4 cut(s) 70, 163, 379, 496
BstMWI GCNNNNNNNGC 2 cut(s) 61, 122
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 166
BsuRI GGCC 3 cut(s) 180, 222, 453
BsuTUI ATCGAT 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 49, 248
BtsIMutI CAGTG 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 220, 451, 452
ClaI ATCGAT 1 cut(s) 166
CseI GACGC 1 cut(s) 53
CviJI RGCY 6 cut(s) 116, 180, 198, 222, 271, 453
CviKI_1 RGCY 6 cut(s) 116, 180, 198, 222, 271, 453
DdeI CTNAG 2 cut(s) 83, 227
DpnI GATC 4 cut(s) 72, 165, 381, 498
DpnII GATC 4 cut(s) 70, 163, 379, 496
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 7
FaiI YATR 5 cut(s) 234, 437, 439, 441, 501
FaqI GGGAC 1 cut(s) 305
FbaI TGATCA 2 cut(s) 379, 496
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 2 cut(s) 56, 255
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 180, 222, 453
HapII CCGG 2 cut(s) 56, 506
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 64
HinfI GANTC 3 cut(s) 293, 313, 326
HpaII CCGG 2 cut(s) 56, 506
HphI GGTGA 1 cut(s) 506
Hpy188I TCNGA 3 cut(s) 230, 483, 520
Hpy188III TCNNGA 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 181, 485
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 122
HpyF3I CTNAG 2 cut(s) 83, 227
Hsp92I GRCGYC 1 cut(s) 64
Ksp22I TGATCA 2 cut(s) 379, 496
Kzo9I GATC 4 cut(s) 70, 163, 379, 496
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 284
MalI GATC 4 cut(s) 72, 165, 381, 498
MboI GATC 4 cut(s) 70, 163, 379, 496
MboII GAAGA 1 cut(s) 410
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 2 cut(s) 387, 432
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 7 cut(s) 18, 30, 33, 87, 236, 296, 465
Mox20I TGGCCA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 180
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 180
MspI CCGG 2 cut(s) 56, 506
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 61, 122
NdeII GATC 4 cut(s) 70, 163, 379, 496
NlaIV GGNNCC 2 cut(s) 13, 453
NmuCI GTSAC 1 cut(s) 284
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 313, 326
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 13, 453
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 3 cut(s) 220, 451, 452
PsuI RGATCY 1 cut(s) 70
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 4 cut(s) 70, 163, 379, 496
Sau96I GGNCC 3 cut(s) 220, 451, 452
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 455
SetI ASST 3 cut(s) 228, 307, 496
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 135
Sse9I AATT 2 cut(s) 387, 432
SsiI CCGC 2 cut(s) 125, 192
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 92, 166
TasI AATT 2 cut(s) 387, 432
TfiI GAWTC 2 cut(s) 313, 326
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 188
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 485, 504
TspRI CASTG 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.