Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

4658407 .. 4661217

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGCGTCGCAGACCATCGAGGTCCGGAATCTCGATCGCTACAACTGCGAGCTCGTCCTCAGGAAAGCCCTCACCACTAACGATCAAGACAACCAGCACCTCCTATTAGTGGCGAGGGCTTTCCTGAGGACGAGCACGCAGTTGTGGCGATTGAGATTCTGGACGTCGATGGGTATTAAACCCAAGAGACGGTCCTTAACAATTTTGAACAACATCAGCGGCGTTATCGAACCCGGAAGGATGGCTTTGTTTTTAGGACCCCCGAGTTCTGGTAAATCCACTTTGATCATGACTCTTGCAGGAAAACTAGACTGCAACTTAAAGGTATTGAGTCATTTTCTGCTACTCGGCACCCTTTCTCAATTTGTCATCAATGATTTCAGGACTGAATGCATGTTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

136

Amino Acids

15.37

Weight (kDa)

10.36

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	2 cut(s)	5, 222
AcyI	GRCGYC	2 cut(s)	8, 167
AfiI	CCNNNNNNNGG	3 cut(s)	112, 192, 272
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	2 cut(s)	57, 140
Alw26I	GTCTC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	265
Aor13HI	TCCGGA	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	25, 195, 260
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	3 cut(s)	25, 195, 260
AxyI	CCTNAGG	2 cut(s)	62, 128
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 140
BccI	CCATC	3 cut(s)	26, 166, 238
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	6, 223
BlsI	GCNGC	2 cut(s)	7, 224
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	3 cut(s)	25, 195, 260
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	3 cut(s)	25, 195, 260
BmiI	GGNNCC	2 cut(s)	262, 355
BmrFI	CCNGG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	2 cut(s)	8, 167
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 192, 272
Bse21I	CCTNAGG	2 cut(s)	62, 128
BseAI	TCCGGA	1 cut(s)	27
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	112, 192, 272
BseMII	CTCAG	2 cut(s)	76, 119
Bsh1285I	CGRYCG	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	57, 140
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	28, 237
BslI	CCNNNNNNNGG	3 cut(s)	112, 192, 272
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	57, 140
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	37, 85, 288
BspACI	CCGC	2 cut(s)	5, 222
BspCNI	CTCAG	2 cut(s)	75, 120
BspEI	TCCGGA	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	262, 355
BspT107I	GGYRCC	1 cut(s)	353
BssMI	GATC	3 cut(s)	37, 85, 288
BssNI	GRCGYC	2 cut(s)	8, 167
Bst4CI	ACNGT	1 cut(s)	195
BstACI	GRCGYC	2 cut(s)	8, 167
BstC8I	GCNNGC	2 cut(s)	53, 140
BstDEI	CTNAG	2 cut(s)	62, 128
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	40, 88, 291
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	37, 85, 288
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 148
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	235
Bsu36I	CCTNAGG	2 cut(s)	62, 128
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	53, 140
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	3 cut(s)	25, 195, 260
CviAII	CATG	2 cut(s)	292, 397
CviJI	RGCY	4 cut(s)	55, 71, 122, 248
CviKI_1	RGCY	4 cut(s)	55, 71, 122, 248
DdeI	CTNAG	2 cut(s)	62, 128
DpnI	GATC	3 cut(s)	39, 87, 290
DpnII	GATC	3 cut(s)	37, 85, 288
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	25, 195, 260
Eco53kI	GAGCTC	1 cut(s)	55
Eco81I	CCTNAGG	2 cut(s)	62, 128
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	295, 400
FaiI	YATR	2 cut(s)	293, 398
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	2 cut(s)	291, 396
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	6, 223
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	6, 223
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	6, 223
HapII	CCGG	2 cut(s)	28, 237
Hin1I	GRCGYC	2 cut(s)	8, 167
Hin1II	CATG	2 cut(s)	295, 400
HinfI	GANTC	4 cut(s)	31, 159, 295, 334
HpaII	CCGG	2 cut(s)	28, 237
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	8 cut(s)	28, 35, 64, 89, 127, 163, 292, 385
Hpy99I	CGWCG	2 cut(s)	13, 172
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	302, 318, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 148
HpyF3I	CTNAG	2 cut(s)	62, 128
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	2 cut(s)	8, 167
Hsp92II	CATG	2 cut(s)	295, 400
Kpn2I	TCCGGA	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	37, 85, 288
LpnPI	CCDG	9 cut(s)	41, 49, 110, 140, 148, 250, 258, 288, 370
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	167
MalI	GATC	3 cut(s)	39, 87, 290
MboI	GATC	3 cut(s)	37, 85, 288
MhlI	GDGCHC	2 cut(s)	57, 140
MluCI	AATT	2 cut(s)	204, 365
MlyI	GAGTC	2 cut(s)	289, 343
MnlI	CCTC	6 cut(s)	16, 71, 83, 111, 113, 123
Mph1103I	ATGCAT	1 cut(s)	398
MroI	TCCGGA	1 cut(s)	27
MseI	TTAA	3 cut(s)	180, 200, 323
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	2 cut(s)	28, 237
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	48, 148
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	37, 85, 288
NlaIII	CATG	2 cut(s)	295, 400
NlaIV	GGNNCC	2 cut(s)	262, 355
NmeAIII	GCCGAG	1 cut(s)	330
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	291
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	31, 159
PkrI	GCNGC	2 cut(s)	7, 224
Ple19I	CGATCG	1 cut(s)	40
PleI	GAGTC	2 cut(s)	289, 342
PpsI	GAGTC	2 cut(s)	289, 342
PpuMI	RGGWCCY	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	262, 355
PspPI	GGNCC	3 cut(s)	25, 195, 260
PspPPI	RGGWCCY	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	180, 200, 323
SatI	GCNGC	2 cut(s)	6, 223
Sau3AI	GATC	3 cut(s)	37, 85, 288
Sau96I	GGNCC	3 cut(s)	25, 195, 260
SchI	GAGTC	2 cut(s)	289, 343
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	57, 140
SetI	ASST	5 cut(s)	27, 57, 105, 170, 330
SinI	GGWCC	3 cut(s)	25, 195, 260
Sse9I	AATT	2 cut(s)	204, 365
SsiI	CCGC	2 cut(s)	5, 222
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	21, 36, 170, 231
TasI	AATT	2 cut(s)	204, 365
TauI	GCSGC	2 cut(s)	8, 225
TfiI	GAWTC	2 cut(s)	31, 159
Tru1I	TTAA	3 cut(s)	180, 200, 323
Tru9I	TTAA	3 cut(s)	180, 200, 323
VpaK11BI	GGWCC	3 cut(s)	25, 195, 260
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.