Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

32864186 .. 32866077

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGATTTTAGGGTTGGACATATGCGCTGAGACAGGATATTCTTTTGAGTTTTCTGATGCAAGCTTTCTCTGTCTTAGACACAATGGGATTCTTATAAAAGGGATTTTGGGGTTGCAGGTGATGATTTATAGTCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTAGTTGTTGGAAGGTTAAAGGCTCGAAACATCAACCAGGAAGAGCTAGATGATATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCGGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGTGAACAAGCTGGGGATGATGACACTCCGTTGGAGGAAGGAGATGAAGATGGATTTTTAAAGGCCTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

177

Amino Acids

19.86

Weight (kDa)

4.77

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	56, 162, 346, 470
AluI	AGCT	4 cut(s)	56, 162, 346, 470
Alw26I	GTCTC	2 cut(s)	65, 122
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	229
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	65, 122
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	145, 255, 424
BpiI	GAAGAC	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	1 cut(s)	470
BshFI	GGCC	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	65, 122
BsnI	GGCC	1 cut(s)	524
Bsp143I	GATC	2 cut(s)	368, 457
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	368, 457
BssNI	GRCGYC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	126, 173, 276
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	371, 460
BstMAI	GTCTC	2 cut(s)	65, 122
BstMBI	GATC	2 cut(s)	368, 457
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	125
CseI	GACGC	2 cut(s)	13, 36
Csp6I	GTAC	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	17, 56, 78, 162, 323, 346, 470, 524
CviKI_1	RGCY	8 cut(s)	17, 56, 78, 162, 323, 346, 470, 524
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	126, 173, 276
DpnI	GATC	2 cut(s)	370, 459
DpnII	GATC	2 cut(s)	368, 457
DraI	TTTAAA	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	524
Eco32I	GATATC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	100
FaiI	YATR	6 cut(s)	98, 119, 121, 194, 228, 429
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	2 cut(s)	13, 36
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	97, 461
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	306, 491
HpyCH4V	TGCA	3 cut(s)	158, 214, 268
HpyF3I	CTNAG	3 cut(s)	126, 173, 276
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	368, 457
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	7 cut(s)	24, 37, 117, 200, 323, 350, 456
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	3 cut(s)	145, 255, 424
MaeI	CTAG	1 cut(s)	347
MalI	GATC	2 cut(s)	370, 459
MboI	GATC	2 cut(s)	368, 457
MboII	GAAGA	6 cut(s)	35, 112, 266, 292, 353, 518
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	2 cut(s)	249, 420
MmeI	TCCRAC	3 cut(s)	93, 289, 471
MnlI	CCTC	2 cut(s)	236, 487
MseI	TTAA	3 cut(s)	317, 518, 528
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	119
NdeII	GATC	2 cut(s)	368, 457
NlaIII	CATG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	336
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	317, 518, 528
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	368, 457
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	6 cut(s)	58, 164, 219, 317, 348, 472
SfaNI	GCATC	3 cut(s)	145, 255, 424
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	2 cut(s)	249, 420
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	2 cut(s)	325, 361
TasI	AATT	2 cut(s)	249, 420
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	3 cut(s)	317, 518, 528
Tru9I	TTAA	3 cut(s)	317, 518, 528
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	113, 405, 413, 414, 519
TspGWI	ACGGA	2 cut(s)	381, 477
XapI	RAATTY	1 cut(s)	420
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.