Rroxscaffold_2G00096990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001009
Physical Location & Seq
Forward (+)
18310232 .. 18311331
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096990.1

Sequence Viewer

Length: 213 bp
ATGAAAGTCGAGAGTGAGAGCGTGCCCTCTCAAAACCGTAGCGCTGCCTCCCGTAGGCTGCTTCCAGGGTGGTCTTCGGCACCTCCAGTTCAAGGAAGGGATTCTTCTCCAAAGCATCCTTTTTGGGTGCTCTGTTCTCGGTCCTCTTTTGAAGTAGCAGCTGGAAGAGAAGCCAATGGGCTGAACTGGGTTTACTATATTGAGGCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.76

Weight (kDa)

7.94

Isoelectric Point (pI)

84.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AfeI AGCGCT 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 54, 92
AgsI TTSAA 2 cut(s) 92, 152
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 43
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 44, 58, 158
Asp700I GAANNNNTTC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 31, 45, 170
BciT130I CCWGG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 3 cut(s) 45, 59, 159
BlsI GCNGC 3 cut(s) 46, 60, 160
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 92
Bse1I ACTGG 2 cut(s) 86, 191
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 54, 92
BseNI ACTGG 2 cut(s) 86, 191
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 3 cut(s) 31, 45, 170
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 54, 92
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 27, 132
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 86, 191
BssECI CCNNGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 23
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 31, 45, 170
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 141
CviJI RGCY 5 cut(s) 58, 161, 173, 181, 206
CviKI_1 RGCY 5 cut(s) 58, 161, 173, 181, 206
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 64
FaiI YATR 1 cut(s) 198
FalI AAGNNNNNCTT 2 cut(s) 88, 120
Fnu4HI GCNGC 3 cut(s) 45, 59, 159
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 45, 59, 159
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 45, 59, 159
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 206
HhaI GCGC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 38
HspAI GCGC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 51, 78, 99, 147, 172
Lsp1109I GCAGC 3 cut(s) 31, 45, 170
LweI GCATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 66, 96, 177
MhlI GDGCHC 2 cut(s) 27, 132
MnlI CCTC 5 cut(s) 37, 58, 93, 154, 196
MroXI GAANNNNTTC 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 46, 60, 160
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 176, 208
PvuII CAGCTG 1 cut(s) 161
SatI GCNGC 3 cut(s) 45, 59, 159
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 27, 132
SetI ASST 2 cut(s) 85, 163
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 9
TaqII GACCGA 1 cut(s) 129
TfiI GAWTC 1 cut(s) 101
TseI GCWGC 3 cut(s) 44, 58, 158
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.