Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

28354204 .. 28364021

Gene Structure 9818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTTCCAAAGCACCCATATCGGATCGGAGAACTTCGATCCAAAAGAGCTCGTCGAAACCCCACCTCACACTATCCCGCCAACCGCCTCGATCAAGGGATAGAATGCCGAGTACAGATCGCTCTCGCCGCAGCCTCTAAGCGATTAGAAGATGCAGGACCACCACAAGGCTTGCAAGCTCGTCAAGGTTCAACCTTACGATATACATTGCCCGAGGATGCAACCTGCAACCCCGAATCCTTAGGCCAACCTGACCCTCGGATCAAAACATTAAACAAGTCACACCGGACCCCAAATGTCAAATCAAATCAAACGGAGACATCACAACCTCGTGATCGTCACATCCTCGGACCACCGAACAAAAACCATTCAGTTGCTTGCTCTCCTTTCTCACAAAGTGGTGAGCAGTTGGCAATATGGAGGAACAAATTTGCTTATGAGATGAAATTTCAAGAGCAACAAAAGTTACAGCAGTCCTTAAAGGGAGGCAGACCCATAAGGATCCTAACACAAGTTTGTTTGTGGTGGAGATATGCTAGCTCATGCATATTCCACAATCGAGTGTCACCCACTTTGGAGAGTAGAGTTAATGAGGAAGTTGAGAAGCAAACTTGGTGTTCTAAGAGTGATGCGTCAAGAGAAGATTTCCATGGAGTTTATGGTGAGAGAATTGTTTCGGGGGATGTGCTCAAGATAAGTTGTGCAAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

237

Amino Acids

26.94

Weight (kDa)

9.65

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AciI	CCGC	3 cut(s)	78, 85, 129
AclWI	GGATC	5 cut(s)	32, 33, 269, 496, 509
AcsI	RAATTY	2 cut(s)	428, 446
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	192, 452
AluBI	AGCT	3 cut(s)	50, 179, 540
AluI	AGCT	3 cut(s)	50, 179, 540
Alw21I	GWGCWC	2 cut(s)	52, 690
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	5 cut(s)	32, 33, 269, 496, 509
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	428, 446
Asp700I	GAANNNNTTC	1 cut(s)	673
AspS9I	GGNCC	3 cut(s)	158, 288, 350
AsuHPI	GGTGA	3 cut(s)	413, 558, 674
AsuNHI	GCTAGC	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	158, 288, 350
AxyI	CCTNAGG	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	52, 690
BbvI	GCAGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme18I	GGWCC	3 cut(s)	158, 288, 350
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	3 cut(s)	158, 288, 350
BmiI	GGNNCC	3 cut(s)	6, 290, 503
BmsI	GCATC	3 cut(s)	142, 208, 619
BmtI	GCTAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	4 cut(s)	213, 257, 346, 649
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	213, 257, 346, 649
BseGI	GGATG	3 cut(s)	223, 342, 688
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	52, 690
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	52, 690
Bsp143I	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	3 cut(s)	78, 85, 129
BspANI	GGCC	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	6, 290, 503
BspMI	ACCTGC	1 cut(s)	233
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	5 cut(s)	32, 33, 269, 496, 509
BsrDI	GCAATG	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	213, 257, 346, 649
BssMI	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	649
Bst2BI	CACGAG	1 cut(s)	330
BstC8I	GCNNGC	4 cut(s)	173, 177, 379, 538
BstDEI	CTNAG	3 cut(s)	138, 241, 621
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	223, 342, 688
BstKTI	GATC	7 cut(s)	27, 41, 94, 120, 264, 337, 504
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
Bsu36I	CCTNAGG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	223, 342, 688
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	173, 177, 379, 538
Cfr13I	GGNCC	3 cut(s)	158, 288, 350
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	2 cut(s)	543, 650
CviJI	RGCY	6 cut(s)	50, 134, 171, 179, 246, 540
CviKI_1	RGCY	6 cut(s)	50, 134, 171, 179, 246, 540
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	3 cut(s)	138, 241, 621
DpnI	GATC	7 cut(s)	26, 40, 93, 119, 263, 336, 503
DpnII	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
DraIII	CACNNNGTG	1 cut(s)	398
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	158, 288, 350
Eco53kI	GAGCTC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	2 cut(s)	546, 653
FatI	CATG	2 cut(s)	542, 649
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	129, 132
FokI	GGATG	3 cut(s)	230, 329, 695
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	2 cut(s)	129, 132
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	546, 653
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	3 cut(s)	413, 558, 674
Hpy188I	TCNGA	4 cut(s)	24, 29, 261, 350
Hpy188III	TCNNGA	4 cut(s)	332, 452, 636, 691
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4V	TGCA	6 cut(s)	155, 175, 221, 228, 546, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	138, 241, 621
Hsp92II	CATG	2 cut(s)	546, 653
Kzo9I	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
LpnPI	CCDG	4 cut(s)	141, 238, 264, 299
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	3 cut(s)	142, 208, 619
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	4 cut(s)	279, 338, 465, 564
MalI	GATC	7 cut(s)	26, 40, 93, 119, 263, 336, 503
MboI	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
MboII	GAAGA	2 cut(s)	161, 653
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	52, 690
MluCI	AATT	3 cut(s)	428, 446, 669
Mph1103I	ATGCAT	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	673
MseI	TTAA	4 cut(s)	272, 479, 588, 712
MspI	CCGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	649
NdeII	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	2 cut(s)	546, 653
NlaIV	GGNNCC	3 cut(s)	6, 290, 503
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	279, 338, 564
NsiI	ATGCAT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	130, 133
Psp124BI	GAGCTC	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	6, 290, 503
PspPI	GGNCC	3 cut(s)	158, 288, 350
PsuI	RGATCY	1 cut(s)	501
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	272, 479, 588, 712
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	7 cut(s)	24, 38, 91, 117, 261, 334, 501
Sau96I	GGNCC	3 cut(s)	158, 288, 350
SduI	GDGCHC	2 cut(s)	52, 690
SetI	ASST	9 cut(s)	52, 68, 181, 190, 197, 227, 253, 331, 542
SfaNI	GCATC	3 cut(s)	142, 208, 619
SinI	GGWCC	3 cut(s)	158, 288, 350
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	3 cut(s)	428, 446, 669
SsiI	CCGC	3 cut(s)	78, 85, 129
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	649
TaqI	TCGA	4 cut(s)	37, 55, 90, 559
TasI	AATT	3 cut(s)	428, 446, 669
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	4 cut(s)	272, 479, 588, 712
Tru9I	TTAA	4 cut(s)	272, 479, 588, 712
TseFI	GTSAC	3 cut(s)	279, 338, 564
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	3 cut(s)	279, 338, 564
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	158, 288, 350
XapI	RAATTY	2 cut(s)	428, 446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	673
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.