Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

74691391 .. 74692569

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0632200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGAAGCGAACCAACCACCTCTGCACCAATCCCAATTCTGATCCGAACCAACCACCCCAAGATGACGATTCCCTCATAACCCAAGTCCTCCAACTCCTCCGACCCAATGAGAAAGACTGGAACTTTGACCAACTCCACACCCTCCTCTTCCCCAACTCAACCTCTCCTTCTCCTCGCTCCTTTTTCCTCATCACTCGCCGCCTCGGTGCTCCCTCCAAAGCCCTCAAATTCTTCGATTACGTCTCCGAAAACGTTGCAGGAACCCCTCCAGGATCCAAGGCTTTGCTTTCCTCCGCATTCCAGGCCCTTCTGGAGCTCACATTGCAAGAGCCCACCTCGGAAAAGAAGCTCTTTGAGCTTTACAAGATGGCCAAGGACCGGAATGTCCCGCTGAATATCAAGGCCGCAGGTCTGCTTGTTCGGTCCATGGGCGCGGCTGGGATGGAGGACGAGGCTCTCACAGTGTTTAACGAGCTTCATTTGGGGTTGAAAACTACTCATATTCGCAATGTAGTGATTGGGATGTTGCTGAAGATTGGGCGAGTAGATGATGCACTGAAGGTGCTCGACAAAATGCTTCACCCAGGGCCAGAAGCGAAGTTTCGGGTTGATGACTTTACCGGCGATGTTGTGATCGGCTCATTATTGAGGAGAGAGCAGATAGGGATGAGTGTCAGTGAGGAAGAAATTGTGGAGTTGGTGTCGAAATTTGGTAAGCATGGTGTGTTTCCTAATAACACAATACTTACGAAATTGGTCACTGTTTTGTGTAGGAATAGGAAGGTTGGTATTGCTTGGGATGTTTTACATGATGTCATGAAGATGGGTGGTGCTGTAGAAGCTACTTCGTGCAATGCGCTTTTGACAGCTTTGGGAAGAGATAATGATTTTAAGAGGATGAGTGAGCTTATGGCGAAGATGGAAGAGATGGGCATTAAGCCCGATGTTATAACTTTTGGTATTCTTATTAATCGGTTATGCAAGTCCAGGAGAATAGATGTTGCCTTGGAGGTGTTTGAAAAGATGAGTGGAGGGGTAAAGGGGGTTTCCGCTGAACTAGATGTGATCGTCTATAACACTCTGATTGATGTACTTTGCAAAGTGGGAAGGCAGGAAGAAGGATTGCGTTTGTGGATTCCGATATGCCTTTTTGTGATAGAAAGGAGAGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

392

Amino Acids

43.7

Weight (kDa)

7.06

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	269 - 325	1.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	283 - 329	3.4e-11	PPR repeat family
PPR_1	PF12854	311 - 344	1.2e-11	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	401
AccII	CGCG	1 cut(s)	437
AciI	CCGC	6 cut(s)	202, 297, 392, 408, 437, 1053
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	3 cut(s)	38, 270, 283
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	230, 710
AcuI	CTGAAG	2 cut(s)	554, 581
AfaI	GTAC	1 cut(s)	1095
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	493, 1022
AjnI	CCWGG	4 cut(s)	271, 303, 586, 989
AluBI	AGCT	7 cut(s)	319, 352, 361, 478, 845, 872, 910
AluI	AGCT	7 cut(s)	319, 352, 361, 478, 845, 872, 910
Alw21I	GWGCWC	3 cut(s)	214, 321, 570
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	38, 270, 283
AoxI	GGCC	4 cut(s)	306, 372, 405, 590
ApoI	RAATTY	2 cut(s)	230, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AseI	ATTAAT	1 cut(s)	972
AspLEI	GCGC	2 cut(s)	437, 862
AspS9I	GGNCC	4 cut(s)	307, 379, 426, 590
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	379, 426
BalI	TGGCCA	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	321, 336
Bbv12I	GWGCWC	3 cut(s)	214, 321, 570
BccI	CCATC	5 cut(s)	364, 439, 820, 916, 925
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	4 cut(s)	273, 305, 588, 991
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	1061
BfmI	CTRYAG	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	3 cut(s)	202, 408, 438
BlsI	GCNGC	3 cut(s)	203, 409, 439
Bme1390I	CCNGG	4 cut(s)	273, 305, 588, 991
Bme18I	GGWCC	2 cut(s)	379, 426
BmgT120I	GGNCC	4 cut(s)	307, 379, 426, 590
BmiI	GGNNCC	2 cut(s)	265, 277
BmrFI	CCNGG	4 cut(s)	273, 305, 588, 991
BmsI	GCATC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	2 cut(s)	255, 335
BsaJI	CCNNGG	8 cut(s)	205, 279, 339, 375, 429, 586, 587, 1008
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	3 cut(s)	323, 517, 862
BseBI	CCWGG	4 cut(s)	273, 305, 588, 991
BseDI	CCNNGG	8 cut(s)	205, 279, 339, 375, 429, 586, 587, 1008
BseGI	GGATG	5 cut(s)	450, 531, 675, 808, 906
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	3 cut(s)	323, 517, 862
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	4 cut(s)	89, 137, 165, 667
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	4 cut(s)	308, 374, 407, 592
BsiHKAI	GWGCWC	3 cut(s)	214, 321, 570
BsiSI	CCGG	2 cut(s)	382, 624
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	308, 374, 407, 592
Bsp1286I	GDGCHC	4 cut(s)	214, 321, 336, 570
Bsp143I	GATC	4 cut(s)	43, 275, 636, 1068
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	6 cut(s)	202, 297, 392, 408, 437, 1053
BspANI	GGCC	4 cut(s)	308, 374, 407, 592
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	2 cut(s)	265, 277
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	3 cut(s)	38, 270, 283
BsrDI	GCAATG	3 cut(s)	323, 517, 862
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	8 cut(s)	205, 279, 339, 375, 429, 586, 587, 1008
BssMI	GATC	4 cut(s)	43, 275, 636, 1068
BssT1I	CCWWGG	4 cut(s)	279, 375, 429, 1008
Bst2UI	CCWGG	4 cut(s)	273, 305, 588, 991
Bst4CI	ACNGT	2 cut(s)	466, 766
Bst6I	CTCTTC	3 cut(s)	155, 874, 921
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	5 cut(s)	450, 531, 675, 808, 906
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	437, 862
BstKTI	GATC	4 cut(s)	46, 278, 639, 1071
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	4 cut(s)	43, 275, 636, 1068
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 325, 358, 842
BstNI	CCWGG	4 cut(s)	273, 305, 588, 991
BstSCI	CCNGG	4 cut(s)	271, 303, 586, 989
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	308, 374, 407, 592
BtgI	CCRYGG	1 cut(s)	429
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	5 cut(s)	450, 531, 675, 808, 906
BtsIMutI	CAGTG	4 cut(s)	471, 557, 685, 762
BveI	ACCTGC	1 cut(s)	401
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	2 cut(s)	437, 862
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	4 cut(s)	307, 379, 426, 590
Csp6I	GTAC	1 cut(s)	1094
CviAII	CATG	4 cut(s)	430, 722, 812, 820
CviQI	GTAC	1 cut(s)	1094
DpnI	GATC	4 cut(s)	45, 277, 638, 1070
DpnII	GATC	4 cut(s)	43, 275, 636, 1068
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	3 cut(s)	155, 874, 921
EarI	CTCTTC	3 cut(s)	155, 874, 921
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	4 cut(s)	279, 375, 429, 1008
Eco24I	GRGCYC	2 cut(s)	321, 336
Eco47I	GGWCC	2 cut(s)	379, 426
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	554, 581
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	271, 303, 586, 989
EcoT14I	CCWWGG	4 cut(s)	279, 375, 429, 1008
EcoT38I	GRGCYC	2 cut(s)	321, 336
ErhI	CCWWGG	4 cut(s)	279, 375, 429, 1008
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	4 cut(s)	433, 725, 815, 823
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	4 cut(s)	429, 721, 811, 819
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	202, 408, 438
FokI	GGATG	5 cut(s)	457, 538, 682, 815, 913
FriOI	GRGCYC	2 cut(s)	321, 336
Fsp4HI	GCNGC	3 cut(s)	202, 408, 438
FspBI	CTAG	1 cut(s)	1061
GlaI	GCGC	2 cut(s)	436, 861
GluI	GCNGC	3 cut(s)	202, 408, 438
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	2 cut(s)	255, 335
HaeIII	GGCC	4 cut(s)	308, 374, 407, 592
HapII	CCGG	2 cut(s)	382, 624
HhaI	GCGC	2 cut(s)	437, 862
Hin1II	CATG	4 cut(s)	433, 725, 815, 823
Hin6I	GCGC	2 cut(s)	435, 860
HinP1I	GCGC	2 cut(s)	435, 860
HinfI	GANTC	2 cut(s)	71, 1138
HpaII	CCGG	2 cut(s)	382, 624
HphI	GGTGA	1 cut(s)	575
Hpy188I	TCNGA	7 cut(s)	43, 48, 104, 250, 343, 1086, 1143
Hpy188III	TCNNGA	2 cut(s)	314, 820
HpyAV	CCTTC	6 cut(s)	180, 320, 556, 778, 1104, 1115
HpyCH4III	ACNGT	2 cut(s)	466, 766
HpyCH4IV	ACGT	2 cut(s)	243, 255
HpyCH4V	TGCA	7 cut(s)	27, 260, 328, 557, 855, 984, 1101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 325, 358, 842
HpySE526I	ACGT	2 cut(s)	243, 255
Hsp92II	CATG	4 cut(s)	433, 725, 815, 823
HspAI	GCGC	2 cut(s)	435, 860
Kzo9I	GATC	4 cut(s)	43, 275, 636, 1068
LmnI	GCTCC	3 cut(s)	185, 217, 316
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	1061
MaeII	ACGT	2 cut(s)	243, 255
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	45, 277, 638, 1070
MboI	GATC	4 cut(s)	43, 275, 636, 1068
MboII	GAAGA	9 cut(s)	142, 226, 547, 698, 835, 891, 931, 938, 1130
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	4 cut(s)	214, 321, 336, 570
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	5 cut(s)	37, 230, 690, 710, 755
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	118, 127
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	4 cut(s)	471, 894, 939, 972
MslI	CAYNNNNRTG	1 cut(s)	824
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	394, 1055
MspI	CCGG	2 cut(s)	382, 624
MspR9I	CCNGG	4 cut(s)	273, 305, 588, 991
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	4 cut(s)	273, 305, 588, 991
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	4 cut(s)	305, 325, 358, 842
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	43, 275, 636, 1068
NlaIII	CATG	4 cut(s)	433, 725, 815, 823
NlaIV	GGNNCC	2 cut(s)	265, 277
NmuCI	GTSAC	1 cut(s)	760
PagI	TCATGA	1 cut(s)	819
PasI	CCCWGGG	1 cut(s)	587
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	71, 1138
PfoI	TCCNGGA	2 cut(s)	271, 989
PkrI	GCNGC	3 cut(s)	203, 409, 439
PshBI	ATTAAT	1 cut(s)	972
PsiI	TTATAA	1 cut(s)	953
Psp124BI	GAGCTC	1 cut(s)	321
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	4 cut(s)	271, 303, 586, 989
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	4 cut(s)	271, 303, 586, 989
PspN4I	GGNNCC	2 cut(s)	265, 277
PspPI	GGNCC	4 cut(s)	307, 379, 426, 590
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	1095
RsaNI	GTAC	1 cut(s)	1094
RseI	CAYNNNNRTG	1 cut(s)	824
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	471, 894, 939, 972
SatI	GCNGC	3 cut(s)	202, 408, 438
Sau3AI	GATC	4 cut(s)	43, 275, 636, 1068
Sau96I	GGNCC	4 cut(s)	307, 379, 426, 590
ScrFI	CCNGG	4 cut(s)	273, 305, 588, 991
SduI	GDGCHC	4 cut(s)	214, 321, 336, 570
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	2 cut(s)	379, 426
SmiMI	CAYNNNNRTG	1 cut(s)	824
Sse9I	AATT	5 cut(s)	37, 230, 690, 710, 755
SsiI	CCGC	6 cut(s)	202, 297, 392, 408, 437, 1053
SspMI	CTAG	1 cut(s)	1061
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	4 cut(s)	271, 303, 586, 989
StyI	CCWWGG	4 cut(s)	279, 375, 429, 1008
TaaI	ACNGT	2 cut(s)	466, 766
TaiI	ACGT	2 cut(s)	246, 258
TaqI	TCGA	3 cut(s)	237, 570, 707
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	5 cut(s)	37, 230, 690, 710, 755
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	3 cut(s)	204, 410, 440
TfiI	GAWTC	2 cut(s)	71, 1138
Tru1I	TTAA	4 cut(s)	471, 894, 939, 972
Tru9I	TTAA	4 cut(s)	471, 894, 939, 972
TscAI	CASTG	4 cut(s)	471, 564, 685, 769
TseFI	GTSAC	1 cut(s)	760
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	2 cut(s)	470, 836
TspRI	CASTG	4 cut(s)	471, 564, 685, 769
VpaK11BI	GGWCC	2 cut(s)	379, 426
VspI	ATTAAT	1 cut(s)	972
XapI	RAATTY	2 cut(s)	230, 710
XspI	CTAG	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.