Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

14531373 .. 14533491

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCGATCTTCGCCGACAATTGCCTGTCCATCTCGCCGGCACGTATCACGGAGAAGGGACCCCTACCTGGGAGGTCCCCATCACCTCCACCATTCTCATCTCGACGTTTCACTCCTCGCTTCGAAAGATCGCAGGCTACACGTTGCTTGGCAGCACTTATTGGTTGGCTCAACCTCAGGCTGCGACCACGGCAGGGACGTTTCCGTAGTCAGGGGAGGAGATCAGGGTTTGGGCTCGGGCAACGCCTTCCTTCCTACAAGGATTGGCGGATTTTCGATGGGGGAACTGGACTGTTGGCTGCGCTGGTGCAGAGCGGCGACTGGATATTGATCTGGTGGTTGGGATTATTACTTGCAGCGTCGTCGTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

11.79

Isoelectric Point (pI)

83.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	2 cut(s)	268, 315
AfiI	CCNNNNNNNGG	4 cut(s)	68, 69, 194, 211
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	152, 181, 299, 356
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	59, 75
AsuHPI	GGTGA	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	59, 75
AxyI	CCTNAGG	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	164, 168, 286, 368
BccI	CCATC	3 cut(s)	38, 88, 272
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	69
BisI	GCNGC	5 cut(s)	153, 182, 300, 316, 357
BlsI	GCNGC	5 cut(s)	154, 183, 301, 317, 358
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	59, 75
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	59, 75
BmiI	GGNNCC	3 cut(s)	60, 61, 77
BmrFI	CCNGG	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	68, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 69, 194, 211
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	292, 326
Bse21I	CCTNAGG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	68, 188
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	4 cut(s)	68, 69, 194, 211
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	292, 326
BseRI	GAGGAG	2 cut(s)	105, 232
BseXI	GCAGC	4 cut(s)	164, 168, 286, 368
BsgI	GTGCAG	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	3 cut(s)	61, 72, 210
BslI	CCNNNNNNNGG	4 cut(s)	68, 69, 194, 211
BsmFI	GGGAC	3 cut(s)	61, 72, 210
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	6, 128, 221, 330
BspACI	CCGC	2 cut(s)	268, 315
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	60, 61, 77
BspT104I	TTCGAA	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	292, 326
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	68, 188
BssMI	GATC	4 cut(s)	6, 128, 221, 330
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	39, 135
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	4 cut(s)	9, 131, 224, 333
BstMBI	GATC	4 cut(s)	6, 128, 221, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	164, 168, 286, 368
Bsu36I	CCTNAGG	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	39, 135
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	59, 75
CseI	GACGC	1 cut(s)	348
CviJI	RGCY	5 cut(s)	137, 169, 181, 235, 299
CviKI_1	RGCY	5 cut(s)	137, 169, 181, 235, 299
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	4 cut(s)	8, 130, 223, 332
DpnII	GATC	4 cut(s)	6, 128, 221, 330
EciI	GGCGGA	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	59, 75
Eco81I	CCTNAGG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	59, 75
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	237
FaqI	GGGAC	3 cut(s)	61, 72, 210
Fnu4HI	GCNGC	5 cut(s)	153, 182, 300, 316, 357
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	153, 182, 300, 316, 357
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	5 cut(s)	153, 182, 300, 316, 357
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	102
Hpy99I	CGWCG	3 cut(s)	108, 364, 367
HpyAV	CCTTC	3 cut(s)	49, 257, 261
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	4 cut(s)	43, 106, 142, 199
HpyCH4V	TGCA	2 cut(s)	310, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	4 cut(s)	43, 106, 142, 199
HspAI	GCGC	1 cut(s)	302
KflI	GGGWCCC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	6, 128, 221, 330
Lsp1109I	GCAGC	4 cut(s)	164, 168, 286, 368
MaeII	ACGT	4 cut(s)	43, 106, 142, 199
MalI	GATC	4 cut(s)	8, 130, 223, 332
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	4 cut(s)	6, 128, 221, 330
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	5 cut(s)	66, 96, 126, 185, 210
MroNI	GCCGGC	1 cut(s)	37
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	190
NaeI	GCCGGC	1 cut(s)	39
NdeII	GATC	4 cut(s)	6, 128, 221, 330
NgoMIV	GCCGGC	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	60, 61, 77
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	154, 183, 301, 317, 358
Ppu21I	YACGTR	1 cut(s)	44
PpuMI	RGGWCCY	2 cut(s)	59, 75
Psp5II	RGGWCCY	2 cut(s)	59, 75
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	3 cut(s)	60, 61, 77
PspPI	GGNCC	2 cut(s)	59, 75
PspPPI	RGGWCCY	2 cut(s)	59, 75
SatI	GCNGC	5 cut(s)	153, 182, 300, 316, 357
Sau3AI	GATC	4 cut(s)	6, 128, 221, 330
Sau96I	GGNCC	2 cut(s)	59, 75
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	46, 70, 77, 88, 109, 145, 177, 202
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	2 cut(s)	59, 75
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	268, 315
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	4 cut(s)	46, 109, 145, 202
TaqI	TCGA	4 cut(s)	5, 103, 123, 276
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	318
TseI	GCWGC	4 cut(s)	152, 181, 299, 356
TspGWI	ACGGA	2 cut(s)	65, 194
VpaK11BI	GGWCC	2 cut(s)	59, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.