Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

21286854 .. 21288296

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACGAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCAGTAAACAGGACTGGTTTGCAGTGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGCTGAAGGCATCTTTGCAAGGTTCATCAACGGGTGCTATTACAAGGACCCCCATAATACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

7.83

Isoelectric Point (pI)

19.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	50, 197
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	245, 292
AluI	AGCT	2 cut(s)	245, 292
Alw26I	GTCTC	2 cut(s)	107, 254
AoxI	GGCC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	27
BccI	CCATC	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	107, 254
BfaI	CTAG	3 cut(s)	167, 176, 352
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	107, 254
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	50, 197
BspANI	GGCC	1 cut(s)	27
BspHI	TCATGA	2 cut(s)	231, 285
BspLI	GGNNCC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	106, 135
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	107, 254
BstMBI	GATC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
CciI	TCATGA	2 cut(s)	231, 285
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	3 cut(s)	29, 232, 286
CviJI	RGCY	6 cut(s)	27, 33, 65, 245, 267, 292
CviKI_1	RGCY	6 cut(s)	27, 33, 65, 245, 267, 292
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	32, 235, 289
FaiI	YATR	9 cut(s)	19, 30, 69, 159, 164, 227, 233, 287, 344
FatI	CATG	3 cut(s)	28, 231, 285
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	3 cut(s)	167, 176, 352
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	32, 235, 289
HinfI	GANTC	2 cut(s)	115, 150
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188III	TCNNGA	4 cut(s)	119, 221, 232, 286
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	106, 135
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	92, 128, 307
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	32, 235, 289
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	65, 70, 114
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	3 cut(s)	167, 176, 352
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	27
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	32, 235, 289
NlaIV	GGNNCC	1 cut(s)	338
PagI	TCATGA	2 cut(s)	231, 285
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	336
PspPPI	RGGWCCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	135
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	109
SetI	ASST	6 cut(s)	10, 62, 145, 247, 294, 313
SfaNI	GCATC	1 cut(s)	308
SinI	GGWCC	1 cut(s)	336
SsiI	CCGC	2 cut(s)	50, 197
SspMI	CTAG	3 cut(s)	167, 176, 352
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	106, 135
TaiI	ACGT	1 cut(s)	62
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	99
TspDTI	ATGAA	4 cut(s)	220, 248, 302, 303
TspRI	CASTG	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	336
XspI	CTAG	3 cut(s)	167, 176, 352
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.